| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3056 |
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| Symbol | |
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| ID | 7973776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3213499 |
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| End bp | 3214422 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793640 |
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| Product | pyrroloquinoline quinone biosynthesis protein PqqB |
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| Protein accession | YP_002944941 |
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| Protein GI | 239816031 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
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| TIGRFAM ID | [TIGR02108] coenzyme PQQ biosynthesis protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.860524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCA CCGTCCTGGG CTCGGCCGCT GGCGGCGGCT TTCCGCAGTG GAACTGCAAC
TGTCCCAACT GCGCCGGCGT GCGCAGCGGC ACGGTGCGCG CCAAGCCGCG CACGCAGTCG
TCGATCTTCG TGCGCCCCGA CGAGGGCGAG GACGGCGTGC TGTTCAACGC ATCGCCCGAC
ATCCTGGAGC AGATCCGCAG CAGCCCCATC CTGCAGCCCG CACGCGCGAT GCGCGACACA
GCCATCGCCG GCGTGGTGCT GATCGACGGG CAGGTCGACC ATGCCACCGG CCTCTTCATG
CTGCGCGAGC GCGGCACGCC GCTGCCGCTG TGGTGCACCG ACCCGGTGGC CGAAGACCTG
AGCGAGGGTA ATCCCGTGCT GCGCGTGCTG TCGCACTACT GCGGCGTGGC GCGCCACGCG
ATCACGCCGG GCGGCAATTC CTTCGAGGTG CCCGGCGTGC CCGGCCTCGT CTTCCGCGCG
ATGGCGCTCA CCGGCAAGGC CGCGCCGTAC TCGCCGCACC GCGAGCAGCA GGTGCCGGGC
GACAACATCG GCGTGACCAT CCTCGACCGC AGGAGCGGCA AGAGCCTGTT CTACGCGCCG
GGCCTCGGCG CCATCACGCC GCCCGTGTTC GACGCCATGG CCAGCGCCGA CGCGGTCATG
GTCGACGGCA CCTTCTGGAC CGACGACGAG ATGGTTCGCC TGGGCGTGAG CAGCAAGCGC
GCGCGCGAGA TCGGCCACCT GCCGCAGTCG GGCGAGGGCG GCATGATCGA ATGGCTGTCG
AAGCTGCCCG CCACCACCGC GCGGCGCATG CTGATCCACA TCAACAACAC CAACCCCATC
CTCGACGAAG ATTCCGATGA GCATGCGGCG CTGCGGCGCG CAGGCATCGA GCCCTGCGAG
GACGGGATGA CGATCCAACT CTGA
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| Protein sequence | MRITVLGSAA GGGFPQWNCN CPNCAGVRSG TVRAKPRTQS SIFVRPDEGE DGVLFNASPD
ILEQIRSSPI LQPARAMRDT AIAGVVLIDG QVDHATGLFM LRERGTPLPL WCTDPVAEDL
SEGNPVLRVL SHYCGVARHA ITPGGNSFEV PGVPGLVFRA MALTGKAAPY SPHREQQVPG
DNIGVTILDR RSGKSLFYAP GLGAITPPVF DAMASADAVM VDGTFWTDDE MVRLGVSSKR
AREIGHLPQS GEGGMIEWLS KLPATTARRM LIHINNTNPI LDEDSDEHAA LRRAGIEPCE
DGMTIQL
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