| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3000 |
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| Symbol | |
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| ID | 7973720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3154953 |
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| End bp | 3155918 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793585 |
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| Product | transcriptional regulator, RpiR family |
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| Protein accession | YP_002944886 |
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| Protein GI | 239815976 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCA ACGTCGACAC CAATGGCACC ACCGTGGCCC AGCGCATTGC GCAGGCGCTG
CCGCGGCTGA CGCGTTCGCA CCGCCAGGTG GCCGACTTCG TGCTGGAGCA CCCGCTGCAG
GTCGCCACGC TGCCGATCGA CGAGCTCGCG GCCGCGGTGG GCGTGTCGGT GGCCACGGCC
AACCGCTTTG CACGGGCGCT GGATTTCGAC GGCTACGCCA CCTTCCGCGC CGAGCTCGTG
CGCGGCTTCG AATCGCTGGT GGCGCCGGTG GAGCGGCTGC GCGGCAACCT GGAACATCCG
ACCACGGTGG CCGAGGTGTT TGCCACCGCG CTCGACGAGA GCCGGCGCAA CATCGAGGCC
ACGCGCCAGT CGCTCGACTA CGCCGCCTGC GACGCCGCGG TGCAGCGCGT CCTGAAGGCG
CGCTCGATCT ACATCGGCGG CTTCGGCGCC AGCGCCTGGC TCGCGGGGCT GCTGCAGCAT
GGGCTGGACG GCAGCTGCAA CGACGTGCGG ATGCTGTCCA GCGTCAGCGG CGTCACGCAT
GCGGCGCGCA CGCTCACGCA CGCCGGCCCG CAGGACCTGT TCATCGGCCT GACCTTTCCG
CGCTACCTCA CCGACACGGT GGCGCTGGCG CAGATCGCCA AGGGCCAGGG CTGCGCCGTG
CTGGCGCTGA CCGACCGTCC GAGTTCGCCG CTCGCGCCAC TGGCCGACGT GGCGCTCTAT
TGCCAGACCG AGACCAGCTA CCGGCCGAAC TGCGAAACCA GCGTGCTGGC ATTGATCGAG
GCATTGACCA GCGCGGTGGC GCTGCGTGCG CCGCGCGCGG TGCAGTCCGC GAGCCGCATC
CTGCAGGCGG TGCGGCCCTG GCTGCATGGC GCGCAGGGCC TGCCGCGGGC GGAAGTCTCC
TCGGCACTGC CCGCCGGCGC GGCACCGGCC GGGGCCGCCA GGAAAAAGAA GAAAGCCTCC
TCATGA
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| Protein sequence | MSTNVDTNGT TVAQRIAQAL PRLTRSHRQV ADFVLEHPLQ VATLPIDELA AAVGVSVATA
NRFARALDFD GYATFRAELV RGFESLVAPV ERLRGNLEHP TTVAEVFATA LDESRRNIEA
TRQSLDYAAC DAAVQRVLKA RSIYIGGFGA SAWLAGLLQH GLDGSCNDVR MLSSVSGVTH
AARTLTHAGP QDLFIGLTFP RYLTDTVALA QIAKGQGCAV LALTDRPSSP LAPLADVALY
CQTETSYRPN CETSVLALIE ALTSAVALRA PRAVQSASRI LQAVRPWLHG AQGLPRAEVS
SALPAGAAPA GAARKKKKAS S
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