Gene Vapar_2787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2787 
Symbol 
ID7971000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2933626 
End bp2934246 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content70% 
IMG OID644793373 
Product2'-5' RNA ligase 
Protein accessionYP_002944674 
Protein GI239815764 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.320306 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGAAC AACTGCTGCT CCCAGGCATC GATCCCGCGC CGCCGCCGTT GCGCCGCCCG 
CGCCGCACCG TATCACCCAA GGAGCGCCTG CCGCGCTCGC TGTTCTTCGC GATCTTTCCG 
CGCCCCGAAG ATGCCGCGTC GATTGCCGCG CTGGCGGCCC GCCTGAAGGA CCGGCACGCG 
CTCAAAGGCA AGCTGACCGA GGCGCATCGC CTGCACGTCA CGCTGCATCA CCTCGGGCAT 
TTTCCGGCAG TGCCGCGCGA AAAGGTGCAA GCCGCCCTGC AGGCCGCGGC CGCCGTGGCG 
CCGCCGTCGT TCGAGGTGGT GTTCGACGAG GCCATGCGCT TCGAGCAGAG CAAGGCCTTC 
GTGCTGTGCG GCGGCGGCAG CGGCACCTCG GCGCTTGCGG CATTCAGGCA GCGGCTGGGC 
GAGGCACTGG CGGATGCGGG CTTCAAGCCC GAGCGCGGCT TCACGCCTCA CATGACGCTG 
GCCTACACGC CGCGCAGGAT CGAGCCGCAT CTGGTCGAGC CGGTCCGGTG GATGGCCGAC 
TCGTTCTCGC TGATCGAAAG CCACGTCGGC GAAGGCATCC ATGAGGTGCT GGGGCGGTGG 
CCTTCGGACC GGGCGGCCTG A
 
Protein sequence
MPEQLLLPGI DPAPPPLRRP RRTVSPKERL PRSLFFAIFP RPEDAASIAA LAARLKDRHA 
LKGKLTEAHR LHVTLHHLGH FPAVPREKVQ AALQAAAAVA PPSFEVVFDE AMRFEQSKAF 
VLCGGGSGTS ALAAFRQRLG EALADAGFKP ERGFTPHMTL AYTPRRIEPH LVEPVRWMAD 
SFSLIESHVG EGIHEVLGRW PSDRAA