| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2681 |
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| Symbol | |
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| ID | 7972280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2824717 |
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| End bp | 2825748 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793269 |
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| Product | Endoribonuclease L-PSP |
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| Protein accession | YP_002944572 |
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| Protein GI | 239815662 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0232288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAAGTCC AGGGCGAAAA CACCTCCTCC TTGCGCGTCG AGCGCCTTTC GCTGCCCGCC
AGCCTTGCGC TGGCCGCCGA CGGCCGCGCG CCTTTCGCGG CGCTCGGCTA CGGCACGCCG
CATGAACTGG CATGGATGCC GACCGTCAAT GCACGCGTTC TTTCCGAGCA AGGCGCCATG
GCGGACGTGT GGCACGTGAG CGGTGGGCGG GTGGCATCGA GCACCACCGG CATCGCCCGC
TGGCGCAGCG ACGGACACTG GCTGCTCGGC GCCATCGACC TCGACGAATC GGTCGAGAAG
CAGGATCTTG CCGAGCTCTC GCACCGCGCC TACCGCGACC TGTTCAAGAC CCTCGACCAG
GCCGGCACGC CGCACCTGCT GCGCATCTGG AACTACCTGC CGCAGATCAA TGCCGACGGC
GGCGGGCTGG AGCGCTACCG CCAGTTCAAC CTCGGGCGCC AGGAAGCATT TTTCGAGGCT
GGCCGCGCCG CCTTCGAGGG CGCGCCCGCG GCATGTGCGC TGGGCATCCA CCAGGGTGCG
CTGTCGATCC GCTTCCTGGC CGGCCAGACC GCGCCCATGC CGGTCGAGAA CCCGCGCCAG
GTCTCGGCCT ACCGCTACCC CGAAACCTAC GGCCCGCGCT CGCCCACCTT CTCGCGCGCC
GCGCTGGCCG AGATCGGCAA TGGCGAGGTG GCGCTTTTCA TATCGGGCAC CGCGAGCATC
GTGGGCCATG AAACCGTGCA CCATGGCGAC GTGCTGGAGC AGACGCGCGA AACGCTGCGC
AACCTCGAAG CCGTGATCGC GGCCGCCAAC GGCCAGGCCA CGGCCAGCTT CGCGCTCTCC
ATGCTCGACT GCGTGGTCTA CGTGCGGCAT CCGGGGGATA CCGACAAGGT GCGCGGCGTG
CTCGAGAGCG CGCTCGGCGC CGACGCGCCG ATGATCCGCC ACGCGGTCTA CCTGGAAGCG
GACATCTGCC GCAGCGACCT GCTGGTCGAG ATCGAAGCCC ACGCCGTCGC ACCGGGTCGC
CTGCGGGCCT GA
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| Protein sequence | MQVQGENTSS LRVERLSLPA SLALAADGRA PFAALGYGTP HELAWMPTVN ARVLSEQGAM
ADVWHVSGGR VASSTTGIAR WRSDGHWLLG AIDLDESVEK QDLAELSHRA YRDLFKTLDQ
AGTPHLLRIW NYLPQINADG GGLERYRQFN LGRQEAFFEA GRAAFEGAPA ACALGIHQGA
LSIRFLAGQT APMPVENPRQ VSAYRYPETY GPRSPTFSRA ALAEIGNGEV ALFISGTASI
VGHETVHHGD VLEQTRETLR NLEAVIAAAN GQATASFALS MLDCVVYVRH PGDTDKVRGV
LESALGADAP MIRHAVYLEA DICRSDLLVE IEAHAVAPGR LRA
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