| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2675 |
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| Symbol | |
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| ID | 7972274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2819855 |
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| End bp | 2820697 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793263 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_002944566 |
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| Protein GI | 239815656 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0615547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAAAT CCCGCGCCAT GCCGTCCGCC TCTGCCGCTC CGTCCGAATC CTGGCCCTGG
CCGCTTGCCA TTCGCGCCAG CGCGGCCTGG CACGTGGCGG CCATTGGCGC CGGCGCGCTG
GTGCCGGGCG CCATGCCCTG GGCCATCGGC GCCATCGTGC TGAACCATGC GCTGATCACC
GGCGCGGGAC TCACGCCGCG CAGCAGCCTG CTGGGCCCCA ATGTCACGCG CCTGCCCGCG
GCGGCCGCTG CCCGGCGCCA GGTGGCCATC ACCATCGACG ACGGGCCCGA CCCCGAGGTC
ACGCCCCGCG TGCTCGACCT GCTCGACGCG CACGGCCAGC GCGCCACCTT CTTCTGCATT
GCCGAGCGCG TGCTGGCCCA CCCGGCGCTG GCGCGCGAGA TCGTGGCGCG GGGCCACAGC
ATCCAGAACC ACACGGCGCG GCACCGGCAC AATTTTTCGT TCCTCGGGCC GCGCGGCTTT
GCGAGCGAGA TCGCGCGCGC GCAGGACATC CTGGCCGACA CCACCGGCCA GCGCCCGACC
TGCTTCCGCG CGCCGGCGGG CCTGCGCAAT CCGTTCCTCG AGCCGGTGCT GCACCGGCTC
GGCCTGTCGC TCGTGAGCTG GACGCGCCGC GGCTTCGACA CGCGCGAAGG CGATCCCGCC
AAGGTCATGG CGCGCCTGGA CCGCAAGCTG CAGGCGCGCG ACATCCTGCT CCTGCACGAC
GGCAACGCCG CGCGCACCCC TTTGGGAAAC CCTGTATTGC TGGAGGTACT GCCCTTGCTT
TTCGAACGCC TGCGCGCCGA GCGCCTGCAC GCCGTCACCC TGCCGGAAGG CCTTGAACCA
TGA
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| Protein sequence | MGKSRAMPSA SAAPSESWPW PLAIRASAAW HVAAIGAGAL VPGAMPWAIG AIVLNHALIT
GAGLTPRSSL LGPNVTRLPA AAAARRQVAI TIDDGPDPEV TPRVLDLLDA HGQRATFFCI
AERVLAHPAL AREIVARGHS IQNHTARHRH NFSFLGPRGF ASEIARAQDI LADTTGQRPT
CFRAPAGLRN PFLEPVLHRL GLSLVSWTRR GFDTREGDPA KVMARLDRKL QARDILLLHD
GNAARTPLGN PVLLEVLPLL FERLRAERLH AVTLPEGLEP
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