| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2532 |
|---|
| Symbol | |
|---|
| ID | 7970009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2673246 |
|---|
| End bp | 2674190 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644793119 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002944424 |
|---|
| Protein GI | 239815514 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCA TCGACCTTCT CAAGGTGTTC CTGCGCGTGG CCGAAACCGG CAGCTTCACG
CGTGCGGCCG ATCGGCTCGC GCTGCCGCGC GCCACCATTT CCACGGCGGT GCAGCAGCTC
GAGGCGAAGC TGGGCTCGCG CCTGCTGCAC CGGACCACGC GGCGCGTCGG CCTCACGCCC
GACGGCGAGG TGCTGCTGGA ACGCGCCCGC ACGCTCGTGG CCGACATGGA AGACATCGAG
CAGCAGTTCC TGCCCTCGCG CAGCCAGGTG AGCGGACGGC TCAAGGTCGA TGTGCCGAGC
CGCATCGCGC GGCGGCTCAT CGCGCCGGCG CTGCCGGATT TCTTCGAGCG CTACCCGGCG
ATCGAGCTCG AGCTCGGCTC CAGCGACCGT GCGGTGGACC TGGTGCTCGA AGGTGTCGAT
TGCGCGCTGC GCGTGGGTCC GTTGGCGAGC AGCAGCCTGG TCGCGCGGCC GCTCGGGCAT
TTCACGCTGA TCAATTGCGC GAGCCCGGCC TACCTGGCGC GCCATGGCAC GCCGCGCACG
CCGGCGGACC TGCCGGAGCA CATCGCGGTC AACTACGCCT CGCCGACCAG CGGCCGCGCG
GCGCCCTGGG AGTGGCAGCG CGACGGCGAG ACCGCGACAC TGCGCATGCG CAGCCAGGTC
AGCGCAAACA ACGCCGAGAC CTACATCGCC TGCGCGCTGG CAGGCCTCGG GCTGATCCAG
ATCCCGGCCT ACGACGTGCG CGAACACCTC GCGGCCGGCG AGCTGGCCGA GGTGCTGCCC
GAAGCACGCG CCCAACCGCT GCCGGTGCAC CTGGTCTATC CGCACCGGCG CAATCTCTCG
CGCCGCATGC AAGCCTTCGC GGGCTGGCTC GAGACGCTGC TCGCCGCCTC GCTCGATACG
CCCGCAGCAC CGCGGCCGGC CGGCCCACGA ACGCCGCGCA GGTAG
|
|---|
| Protein sequence | MDRIDLLKVF LRVAETGSFT RAADRLALPR ATISTAVQQL EAKLGSRLLH RTTRRVGLTP
DGEVLLERAR TLVADMEDIE QQFLPSRSQV SGRLKVDVPS RIARRLIAPA LPDFFERYPA
IELELGSSDR AVDLVLEGVD CALRVGPLAS SSLVARPLGH FTLINCASPA YLARHGTPRT
PADLPEHIAV NYASPTSGRA APWEWQRDGE TATLRMRSQV SANNAETYIA CALAGLGLIQ
IPAYDVREHL AAGELAEVLP EARAQPLPVH LVYPHRRNLS RRMQAFAGWL ETLLAASLDT
PAAPRPAGPR TPRR
|
|---|
| |