| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2417 |
|---|
| Symbol | |
|---|
| ID | 7970461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2582640 |
|---|
| End bp | 2584097 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792999 |
|---|
| Product | Fibronectin type III domain protein |
|---|
| Protein accession | YP_002944309 |
|---|
| Protein GI | 239815399 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCGA TGCGATGGAA AAACTGGAAG GGATGGGCCG CGGCTGCGGC GATCACGATG
GCGGCAGGGC AGGCCGCGAC GGCGGCGGTG CCATTGCCGT CGCTCGGCGC CAACCCGGCG
GAGGTGAGCG TGTCCGGCCT GTCGGCGGGC GGCTTCATGG CCGTGCAATT GCACGTGGCC
TATTCGGCCA CCTTCAAGCG CGGTGCCGGC GTGGTGGCCG GCGGGCCGTA CTACTGCGCA
GAGGGCTCGG TGCTCAACGC CACCGGCCGC TGCATGGCGC ACGGCAGCAG CATTCCGGTG
TCGACACTGG TCAGCACCAC CAACAGCTGG GCCGCCAGTG GCGCGATCGA CCCGGTGTCG
AACATGGCGA GCTCGAAGGT GTACCTGTTC TCGGGCACTT CGGACAACAC CGTCAAGACC
GCGGTGATGG ACGACCTCAA GACCTACTAC CAGAGCTTCG TGCCCGCGGC CAACACGGTC
TACAGGAACA ACATCGGCGC CGGCCACGCG ATGGTCACCG ACGACTACGG CGGCGCCTGC
GGCACCACCG CCGCGCCCTA CATCAACAAC TGCGGCTTCG ACCTGGCGGG CGAGATCCTC
ACGCAGCTCT ACGGTCCGCT GAACCCGCGC AACAACGGCA CGCTGGGCGG CAGCTTCACC
GAGTTCAACC AGTCGGAATT CATCACCGGC CACGGCGTGG CGGCCACCGG CTGGATCTAC
GTGCCGCAGG CCTGCACCAC CGCGTCATGC CGCGTGCACC TGGTGCTGCA TGGCTGCAAG
CAGAACTACA CCGACGTGGG CGACCAGTAC GTGAAGAAGA CCGGCTACAA CCGCTGGGCC
GACACCAACA ACATCGTGCT GATCTACCCG CAGACCAGCA CCGGCGCCAC CAACAGCTGC
TGGGACTGGT GGGGCTACGA CAACGCGAAC TACGCAAAGA AGTCGGGCCC GCAGATGGCG
GCGCTCAAGG CCATGGTCGA CCGCGTGACC GGCTCCGGCG GCGGCTCGTC GCTGCCCGCG
CCCACCGGCG TGGGCACCTC GGGCGCGACC AGCAGCAGCA TGGTGATCGG CTGGGCCGGC
GTCACGGGTG CGAGCGGCTA CAACGTCTAC CGCGGCGGCA GCAAGGTCAA CGCGGCGCCG
GTGGCCGGCA CCAACTACAC CGACACCGGC CTGGCCCCGT CCACCACCTA CAGCTGGACC
GTGGCGGCGC TGGACGCCGG CAATGCGCAA GGCGCGATGT CGGCCGCGGC CACGGGCACC
ACGCTCGCTG GCAGCGGTGG CGGCGGAACC TGCTACACCG CCAGCAACTA CGCGCACACC
GTGGCGGGCC GCGCCTACGC GCTGTGGGGC CTTACCTATG CCTATGGCTC GGGCCAGTCG
ATGGGCCTGT GGAACGTCTA CGTGACCACC ACGCTCAAGC AGACCGGGCC CAACTACTAC
GTGATCGGCA CCTGCTGA
|
|---|
| Protein sequence | MAAMRWKNWK GWAAAAAITM AAGQAATAAV PLPSLGANPA EVSVSGLSAG GFMAVQLHVA
YSATFKRGAG VVAGGPYYCA EGSVLNATGR CMAHGSSIPV STLVSTTNSW AASGAIDPVS
NMASSKVYLF SGTSDNTVKT AVMDDLKTYY QSFVPAANTV YRNNIGAGHA MVTDDYGGAC
GTTAAPYINN CGFDLAGEIL TQLYGPLNPR NNGTLGGSFT EFNQSEFITG HGVAATGWIY
VPQACTTASC RVHLVLHGCK QNYTDVGDQY VKKTGYNRWA DTNNIVLIYP QTSTGATNSC
WDWWGYDNAN YAKKSGPQMA ALKAMVDRVT GSGGGSSLPA PTGVGTSGAT SSSMVIGWAG
VTGASGYNVY RGGSKVNAAP VAGTNYTDTG LAPSTTYSWT VAALDAGNAQ GAMSAAATGT
TLAGSGGGGT CYTASNYAHT VAGRAYALWG LTYAYGSGQS MGLWNVYVTT TLKQTGPNYY
VIGTC
|
|---|
| |