| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2228 |
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| Symbol | |
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| ID | 7969942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2374727 |
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| End bp | 2376826 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792816 |
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| Product | hypothetical protein |
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| Protein accession | YP_002944129 |
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| Protein GI | 239815219 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4222] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.374706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTGGC TGGCGCTCGC AGGTGCCGCC GGTGCGCTTG TGGCTGCCTG CGGTGGCGGC
AGCGGCGGAG GAGGAGGAGG AGGAGGGTGG GCATTTCCCG TGACGGGCGG TGGTGGTGGG
AGCGGCACCA CCAACCCGCC GGCCGCGCAA TCGAAGACCG GCGCCTTCCT CGACGCGGCG
GTCGAGGGCC TCGACTACAC CACAGGCGGC GCCGCCGCGG CCAGCACCAA CGCGAATGGC
GAATTCAGCT GCAAGGATGG CGAGACCGTG GCCTTCAGCG CCGGCGCGCT CGCGCTCGGC
AGCGCGGCCT GCGGAGACGC GGTCACGCCG CTGACCCTGG CCGGCGGCAC TGACGTGAAG
GCCGATGCGG TCGTCAATCG CCTGCTGGCA TTGCAGAGCT TCGACGAGGA CCGCGATCCC
TCGAACGGCA TCCGGCTGAC GCCTGCGCTC AAGGCCGGAC TGACGGCAGG CGCGCTCGAT
TTCAGTGCCT CGGCCGAGGC CTTCGACACC GCGCTCAATG CCGTGCTCGC CGCGCTGCCC
GCGCCGTACG CCACGCGCAC GGTCGACGCC GCCCGCCGCA TGCTGGCGCG CGAGCACTTC
GAAAACACCC TGGCCTCGCG CCTGGCCGCC CCCGTGACCG AAGCCGCCAC GCAGGCCAAC
CAGCTCGGCG CCATCGGCAT CGGCGTGACG CGCTACCAGC TGCAGGCCGA CGCCAGTTTC
AACGTGCCCT ATGAAGGCGA CAACGCCAGC ATCAAGGCCG ATTTTCCCCA GGGCTTCCTG
CCGGCCTACG GCTCGGGGCT CGCGTTCAAG GGCAAGGCGG ACGACGGCGC GCTCGAGTTC
TATGCCATCA CCGACCGCGG CCCGAACGGC GACGGCCCGA CCGCGCCCGT GCCCGGCGGC
AATGGCGCCA CCAGCATCAG CAAGGTGTTC CCGGCGCCGT CGTTCGCGCC GAGCTTCGGC
ATCGTGCGCG TCGGCAAGAC GGGCGCCGTG CTCGCCTCGA GCCTGCCGCT CAAGCTCGAT
GCCGGCAGGA AGATCAGCGG CCTGCCGCCG CAATCGGGCG TGGGTTCGAC CGGCGAGACG
CCGCTGACCG ACCGCTACGT GTTCGACGCC GCCAAGGCCA ACTTCGATGC CAACGGCCTC
GACCCCGAGA CGCTGGTGCT CGACAAGGCG CGCAACGTGC TGTGGACCAG CGACGAATAC
GGCCCCTTCA TCGCGCGCAT CAACATGGCG ACCGGTGTGA TCGAGAAGAA ATACGCACCG
GGCAGCGGCG CCGCCGACCT GCCGCTGGTG CTGTCGCAGC GCCGCCCCAA CCGCGGCATG
GAAGGTTTGA CGCTCGATGC TGCGAGCGGC GTGCTGCACG GCTTCCTGCA GAGCCCGATC
GATCCGCGCG ATGGCAGCGG CAAGTCGATC AAGGCCAGGC CGCCGGGCGG CAGCAACACC
GACGTGCGCC ACATCGCGAA GTTCACGCGC TGGCTCGCCT TCGACCCGGC CACCGAAACC
TCGAAGCTCT ACGCCTACCC GATCGACGGC AGCCAGTACG ACAAGGACCG CACCGGCAAC
GCCAAGCTCG GCGACGTGGT GAGCCTGGGC AACGGCCGCT TCATCGTGAT CGAGCAGGGC
GCGCGCAAGG GCGACGGCAA GGTGGCCAAC AAGCTGATGC TGGTGGAGCT GCCGGCCAAC
GCGACGGACA TCAAGGCCTT CGACCACAAC CTGGAGATCA GCAGCATCAC GCAGGCGCCC
TCGGGCACCG CCGACTATTC GAGCGTGGTG ACGATGCGCA AGACCGAGCT GCTCGACCTG
AACGCGCTGG GCTGGCTGGC CGAGAAGGCG GAGGGCCTGA CGATCGTGGA CGACCAGACC
CTGGCGCTGG TGAACGACAA CGACTTCGGC CTGGGTACCG TGCTGCTCGA TGCCGGTGGC
AAGACCCTGG CCGGCAGCGT CGAGGACTGC ACGGCCGACG CCGGTGGCGT GCTCAGCGGC
TGCCCCGCGG GCGCCACCGG CGCGCGCATC ACGCGCGGCT CCGACCTGGA GCGGCCGACG
CGCATCTGGC TCATCAAGCT CGACCGCAAG CTCGGCGAGC TGCGCCTGCC GGCGTCCTGA
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| Protein sequence | MGWLALAGAA GALVAACGGG SGGGGGGGGW AFPVTGGGGG SGTTNPPAAQ SKTGAFLDAA
VEGLDYTTGG AAAASTNANG EFSCKDGETV AFSAGALALG SAACGDAVTP LTLAGGTDVK
ADAVVNRLLA LQSFDEDRDP SNGIRLTPAL KAGLTAGALD FSASAEAFDT ALNAVLAALP
APYATRTVDA ARRMLAREHF ENTLASRLAA PVTEAATQAN QLGAIGIGVT RYQLQADASF
NVPYEGDNAS IKADFPQGFL PAYGSGLAFK GKADDGALEF YAITDRGPNG DGPTAPVPGG
NGATSISKVF PAPSFAPSFG IVRVGKTGAV LASSLPLKLD AGRKISGLPP QSGVGSTGET
PLTDRYVFDA AKANFDANGL DPETLVLDKA RNVLWTSDEY GPFIARINMA TGVIEKKYAP
GSGAADLPLV LSQRRPNRGM EGLTLDAASG VLHGFLQSPI DPRDGSGKSI KARPPGGSNT
DVRHIAKFTR WLAFDPATET SKLYAYPIDG SQYDKDRTGN AKLGDVVSLG NGRFIVIEQG
ARKGDGKVAN KLMLVELPAN ATDIKAFDHN LEISSITQAP SGTADYSSVV TMRKTELLDL
NALGWLAEKA EGLTIVDDQT LALVNDNDFG LGTVLLDAGG KTLAGSVEDC TADAGGVLSG
CPAGATGARI TRGSDLERPT RIWLIKLDRK LGELRLPAS
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