Gene Vapar_2170 details

Gene Information

• Locus tag: Vapar_2170
• Symbol: prpE
• ID: 7973857
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2317030
• End bp: 2318943
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644792758
• Product: propionyl-CoA synthetase
• Protein accession: YP_002944071
• Protein GI: 239815161
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02316] propionate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0671437
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCGCT ACGAAGAGTT CTACCGCCAG TCCGTCGATG CGCCCGAGGC CTTCTGGGCC 
GAGCAGTCGA AGCTGATCGA CTGGCAAGCC CCCGCCGAGC AGATCCTCGA CGCCAGCCAA 
CCGCCTTTTG CGCGCTGGTT CGTGGGCGGC ACCACCAACC TGTGCCACAA CGCGGTCGAC 
CGGCACCTGG CCGCGCGCGG CGGCCAGCCC GCGCTGATCT TCGTTTCCAC CGAAACCGGC 
GTCGAGAAGA GCTACAGCTT CAAGGAACTG CACGCCGAGG TGCAGCGCAC CGCCGCCAGC 
CTGATGGAGC TGGGCGTGGG GAAGGGCGAC CGCGTGCTCA TCTACATGCC GATGATTCCC 
GAGGCCGCCT TCGCGATGCT GGCCTGTGCA CGCATCGGCG CGATCCACTG CGTGGTGTTC 
GGCGGATTCG CGAGCGGCTC GCTGGCCACG CGCATCGAGG ACGCCGAGCC CAAGGTGGTG 
GTGAGCGCCG ACGCCGGCTC GCGCGGAGGC AAGGTCATTG CGTACAAGCC GCTGCTCGAC 
GAGGCGATCC GGCTGTCGAA GTACAAGCCG GCCGCGGTGC TGCTCACCGA CCGCGGCCTC 
GCACCCATGG AGCTGACGGC CGGCCGTGAC CACCTAGCGG CCGAATTGCG GCAGAAGCAC 
CTCGACGCCC AGGTGCCCTG CGCCTGGCTG GCCGCCACCG ACATCAGCTA CACCATCTAC 
ACCAGTGGCA CCACCGGCAA GCCCAAGGGC GTGCAGCGCG ACGTGGGCGG CTATGCCGTG 
GCGCTGGCCG CGAGCATGAA GCACATCTTC GACGGCCGCG CCGGCGAAAC CTACTTCTCG 
ACCAGCGACA TCGGCTGGGT GGTGGGCCAC AGCTACATCG TCTACGGTCC GCTGATCGCC 
GGCATGGCCA CCCTCATGTA CGAGGGCTTG CCCACGCAAG GCATCGACCG GCAGCCCGAC 
GGCGGCATCT GGTGGCGCCT GGTCGAGAAG TACAAGGTGA CGGTGATGTT CAGCGCGCCC 
ACGGCGGTGC GCGTGCTCAA GAAGCAGGAC CCGGCGCTGC TGAAGAGATA CGACCTGTCG 
AGACTGCGCG CGCTGTTCCT GGCGGGCGAG CCGCTCGACG AGCCCACCGC GCGCTGGATC 
AGCGAGGGCC TGGGCGTGCC GATCATCGAC AACTACTGGC AGACCGAATC GGGCTGGCCG 
ATGATCACCA TTGCCAACGG CGTCGAGGCC AAGCCCAGCA AGTTCGGCAG CCCCGGCGTC 
CCGATGTACG GCTACCGCAT CAAGATATTG CACGAATCGA CCGGCGAGGA ACTGACCGCC 
CCCAATGAAA AGGGCGTGGT CGTGGTCGAA GGCCCGACCC CGCCCGGCTT CATGCAGACC 
GTGTGGAAGG ACGACGCGCG CTTCGTCAGC ACCTACTGGA AAAGTGTGCC CGGCAAGATG 
GTCTATTCGA CCTTCGACTG GGGCATCCGC GACGAGGACG GCTATTTCTA CATCCTCGGG 
CGCACCGACG ACGTGATCAA CGTGGCCGGC CACCGCCTGG GCACCCGCGA GATCGAGGAG 
AGCATCTCGG GCCACGCCAA CGTGGCCGAG GTCGCGGTGG TGGGCGTGGC CGATGCGCTC 
AAGGGCCAGG TGGCGATGGC TTTCGTGGTG CCGAAGGACG GCATCGCCGT GACCGATGCC 
GACGCGGCGC TGAGGCTCGA AGGCGAGATC ATGAAGGTGG TGGCCGACCA ACTCGGCGCG 
CTGGCGCGGC CTGCCCGGGT GCGCTTCGTC TCGGGCCTGC CCAAGACCCG CAGCGGCAAG 
CTGCTGCGGC GCGCCATCCA GGCCGTGTGC GAGCAGCGCG ATCCGGGCGA CCTGACCACC 
ATCGACGACC CCGCCACGCT GCAGCAGATC AGGCAGCTGG TTTCTTCGGC CTGA 

 

Protein sequence

MSRYEEFYRQ SVDAPEAFWA EQSKLIDWQA PAEQILDASQ PPFARWFVGG TTNLCHNAVD 
RHLAARGGQP ALIFVSTETG VEKSYSFKEL HAEVQRTAAS LMELGVGKGD RVLIYMPMIP 
EAAFAMLACA RIGAIHCVVF GGFASGSLAT RIEDAEPKVV VSADAGSRGG KVIAYKPLLD 
EAIRLSKYKP AAVLLTDRGL APMELTAGRD HLAAELRQKH LDAQVPCAWL AATDISYTIY 
TSGTTGKPKG VQRDVGGYAV ALAASMKHIF DGRAGETYFS TSDIGWVVGH SYIVYGPLIA 
GMATLMYEGL PTQGIDRQPD GGIWWRLVEK YKVTVMFSAP TAVRVLKKQD PALLKRYDLS 
RLRALFLAGE PLDEPTARWI SEGLGVPIID NYWQTESGWP MITIANGVEA KPSKFGSPGV 
PMYGYRIKIL HESTGEELTA PNEKGVVVVE GPTPPGFMQT VWKDDARFVS TYWKSVPGKM 
VYSTFDWGIR DEDGYFYILG RTDDVINVAG HRLGTREIEE SISGHANVAE VAVVGVADAL 
KGQVAMAFVV PKDGIAVTDA DAALRLEGEI MKVVADQLGA LARPARVRFV SGLPKTRSGK 
LLRRAIQAVC EQRDPGDLTT IDDPATLQQI RQLVSSA