| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1861 |
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| Symbol | |
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| ID | 7970878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1992855 |
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| End bp | 1993874 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792462 |
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| Product | NMT1/THI5 like domain protein |
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| Protein accession | YP_002943777 |
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| Protein GI | 239814867 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.228941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC TGCTTCCCTC GCTGCTCGCC ATCTCGGTCC TTGCCGCGCT CGCCAGCTTT
GCCATCGCTC CCGCACAAGC GCAGGCCGAC AAGCCCAAGG ACAAGGACAA GGTCACGCTG
ATGCTCAACT GGTACCTGTA CAGCGAGCAT GCGCCCTTCT TCCTCGGCAG GGAAAAGGGC
TTCTACGCCG ACGAGGGCAT CGAGCTGGAG ATCCAGGAAG GCCGCGGCTC CGCCGTCACG
GCGCAGGCGG TGGCCGCGAA GTCGGCGACC TTCGGCTACA TCGACGTCAC GACCATGATC
AAGGCCGCCG CCAAGGGCGC GCCGCTGAAG TCGACCGGCG TGCTGTTCCA GGTGAGCCCG
ATGTCGGTCA TGGGCTTCAG CGAGAAGAAC ATCAAGGTGC CCAAGGACAT CATCGGCAAG
ACCGTGGCCG TCACGCCGGG CGACTCGATG TCGCAGATGT GGCCTCTTTT CCTCAAGGTC
AACAACATCA AGCCCGAGCA GGTGAAGATC GTCTCGGGCG ATGGCCAGAC CAAGCTCAAT
GCGGTGATCA ACGGCCAGGC CGACCTGCTG CTGGGCTACG TGATGGACCA GGCCATCAAG
CTGCAGGACG CCACCGGCAA GCCCGTGACG CCGATCCGCT TTGCCGACTC GGGCGTGAAC
CAGATCAGCT CCGGCATCAT CGCCAACAAG AACCTGCTGG CCGAGAACCC CGACCTCGTG
AAGCGCTTCA TGCGCGCATC GACCAAGGCC GCCGAAGCCG CCGAGAAGAG CCCCGAAGCC
GCGGTCGACG CCATGCTCAA GGCCAACCCG AAGGCCGGCG TGCGCGACAC GCTGATCGTG
GGCATGAAGC AGAGCGTGGC GCTCTACCAC ACGAAGGAAA CGGCCAACCA GCGCCCGTTC
CGCGTGGCGA TGAAGAACGT GAACGACTCG CTCGACCTGC TGGTGCAGTA CGGCGGCATG
GACGCCTCGA CGCGCGGCAA GCCGGAAGAC TACGTCACCC TCGACTTTCT CCCGAACTGA
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| Protein sequence | MKKLLPSLLA ISVLAALASF AIAPAQAQAD KPKDKDKVTL MLNWYLYSEH APFFLGREKG
FYADEGIELE IQEGRGSAVT AQAVAAKSAT FGYIDVTTMI KAAAKGAPLK STGVLFQVSP
MSVMGFSEKN IKVPKDIIGK TVAVTPGDSM SQMWPLFLKV NNIKPEQVKI VSGDGQTKLN
AVINGQADLL LGYVMDQAIK LQDATGKPVT PIRFADSGVN QISSGIIANK NLLAENPDLV
KRFMRASTKA AEAAEKSPEA AVDAMLKANP KAGVRDTLIV GMKQSVALYH TKETANQRPF
RVAMKNVNDS LDLLVQYGGM DASTRGKPED YVTLDFLPN
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