| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1537 |
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| Symbol | |
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| ID | 7973137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1657321 |
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| End bp | 1661049 |
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| Gene Length | 3729 bp |
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| Protein Length | 1242 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792137 |
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| Product | hypothetical protein |
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| Protein accession | YP_002943454 |
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| Protein GI | 239814544 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5373] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.896798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGTTCC TTGGCATGAT CGCCGGCCTT TTCATCGGGG CTCTGGCTGA ATCGGTTCCG
GCCGCGCTGA TCCTGGCGGT GGTCGGCGCG TTCGCGCTGC CGAAGATCAT CGGCAAGAAA
ACCGCCGCCG AACCCGCGCG CAGCGAGGCT GAGAGCGCAC AGCCTTCCAA CGGCGCGGCC
GCGCCACCCG CAGGCAGCAT GTCGACACTG CAGCAGCGCG TGGCCGAACT CGAACAGCGC
GTGAGCCTGC TCGAGCAGCG GCTGGCGCAG GGTGCGGGCG GCGCGGTGCT CGCGCCGGCC
ATCGATCCGG CGGTCCAGGC CGCGCCCCCC GTGCCGCTTG CCATGCGGCC CGCGGCAGTG
GCCGATGCAG GTGTTGCCGC GGTGCATGTT CCGCTGCCGG AGATCCGGCC CGCAGCAATC
CAGCCACCGC CCGAAGCCGC TGCGCCCGCG CCTGCCAGGC CGCCCGCGGC CATGCCGGCA
CCACCGCGGC GCCCACCACC GCCGCCGCCA CCACCGCCGG TCCCGCTGCG CGACCGCCTG
CCCGCGCCCA TCGCCAACCT GGTCTTCGGC GGCAACATGC TGGTGAAGCT CGGCGTGCTG
ATCCTGTTCC TGGGGCTGGC CTTCCTGCTG CGCTACACGG CCGAGCGCGT CACGGTGCCT
GTCGAGCTGC GCTATGCGGC GGTGGCGTTG GTGGGCGCGG GCCTGCTGGC GCTGGGCTGG
CTGCTGCGCC GCAAGCGCAC CGGCTACGCG CTGATCCTGC AGGGCGCCGG CATCGGCGTG
TTCTACCTGA CGACGCTGGC GGCGATGAAG CTGCACGAGC TGCTGCCGCC GACCGCCGGC
TTCGCCTTCC TGTTTGGCGT GGCCGTGCTG AGCGCGGTGC TCGCGGTGCT GCAGAACGCG
CCGCTGCTGG CCATCGTCGC GGTGCTCGAG GGCTTTGCGG CGCCGGTGCT CGCGTCCACC
GGGCAGAACC GGCCGGTGGG GCTTTTTACC TACCTGCTGG TGCTCGACGT GGGCATCGTG
CTGATCGCGT GGTTCAAGGC CTGGCGCGTG CTGAACCTGA TCGGCTTCGT CGGCACCTTC
ACGCTGGCCG CGGGGTGGGC GCACAGGTAC TACACGCACG ACCAGTACGG CATCGTGCAG
CCCTTCCTGC TGGTGTTCTT CCTGCTGTTC GTCGCCATCG GCCTGCTGTT CGCGCGCCGC
ACCTTGTTCG ACGCGCCGGT GCAGCCCGCG CAGCCGCTGG CCGCGCGTGC GCTCGATACG
CTGCGCCGTG CGGGCCGGGT CGACAGCTCG CTGGTGTTCG GCGCGCCCAT GGTCGCCTTC
GGCCTGCAGG TGCTGCTGAT GCAGCCGTGG GAATACGGCG CCGCGTTCTC GGCCATGGCG
CTCGCGGCCT TCTACTTGGT GCTGGGCCGC CTGGTGTTCG CCACACAGCC CAAGGGCCTC
GCGCTGCTGG CGGAGGCCTA CGCCATCGTG GGCGTGATCT TCGGCACGCT CGCCATTCCG
CTGGGCCTCG AAGGCCGGTG GACCGGTGCG GCCTGGGCCG TGGAAGCGGC CGGCATGTAC
TGGCTGGGCG CGCGGCAGCA GCGCGTGTAT GCGCGCGCCT TCTCGTTCGT GGTGTTTGCC
GGCGCCGTGT GGAAGCTGCT CGAGGCCACG CAGCTCGACG CGGCGGCGGG GCATCCGCTG
CTGCAGGGAT CGGTGATCGG GCCGCTGCTG GTGGCAGTCA GCGCCTTCGC GATGTGGGCG
ATTCATCGGC GAGCCGGGCT CGACGAAGGC AACGGCTGGG AGGCGCTGGT GGGGTCCGCG
CTGCCGTGGC TGGGCATGGG TGCGCTCACG CTGCTGCTGT GGCAGTGGTT CACGCCGCCC
TGGGCGGCAG CGGCAACCGC GGTGCTGGCT TCTGCCGCCT TTGCGGTGTC GGTGCGCTTC
CAGTTGCGGC CGCTGGCTTT CGTGAGCTAT GGCATGCAGG CGCTGGCGGT GGCCGGCTTC
ATCGCCACGC TGCATCAGGT CGCCGATGCG CATCGCGGCG GCGAGGTGCT GGCGAGCGGC
TGGCAGGGCG CGGCGGCGGC GAGCCTGATC GCGCTGAGCC TGCTCGGCAG CGCCGCGTGG
TCGATGCTGC AGGCGCACCG CGCGGCATTG GCACGCGGCA TCCAGCCGGT GTGGTCGCTG
GGCAATGCGA TCGCGGTGAT CGCGGGCGTG GGCCTGCTGC ATCTGGCGAT GCTGTTCCAG
CTGAGCCTTG CGCAGGCGGC GCTGCTGTGG CCGATCACGG CGACCGTGGT GCTCTGGGTG
GCGCTGCGCA TCGCGCACGG GCCGCTCGCG GCGCTGGCGG GCGTGCTGCA GCTTGTCTCG
GCGCTGCTTC ACGTCTACGG CCGCATCTTT CATGCCGAAG CCGCGCCGCC GGCTTTCGCG
CACCTGGGCT TCTGGACGCC GGTGGTGCTG GGGCTCGCGG CGCTGCTGGC CGGCGGCTGG
ATCAGCGGCG AGGCGGGGCG GCGCGCTACC GCTGGCGCTG GAGCGGCTCC GCGCACGCGC
TGGATCAACG ACTGGTGCGC CAACTCCGCT GCGCTGTGGG CGCCGGTGGT CTGGGGGCTG
GGCTGGTGGC TCTTCGGCTG GCTCGACGAA AGTGGCGAGG TACTGCGCCG CAACGGGCTG
GCCGCGCACC TGGCCGCGGC TGCGGTGGCG ATCGTGCTCG TGACCTCCGC GCTTTCGGCG
CTCGTGGCGC ACCGTCGCGG CTGGCCGCAG CTCGGCCGCG CGACCTTGGC CACCTTGCCG
GGCCTCGGCC TGATCGCCGT CCATGCCGTT GCGCTGGCAG CGCCACTGGT CTACGTGCCG
TCGAGCGCGC TCGGCTGGAT CGCCTGGCCG CTGGCGCTGC TGTGGCACCT GCGGCTGCTG
CATGCGCAAA GGCGCTGGCT GGGCGCATCG GCGCTGGTGC CTTTCCACGT GGCGGGCTTC
TGGTTCTTTG TGCTGCTCGC GGCGCGCGAG TGCCAGTGGC AGCTTGGGCG CATCGGTGCG
GAATGGTCGA GCTGGCAATT GCTGGGCTGG GCCATCGTGC CTGCGGTGGC GCTCTGGATG
CTGCGCTCGC GCGCGCTGCT GCAGCGCTGG CCGCTGGCCG AGTACCGCGC CGCCTACCTC
GAAGTTGCGG CGATGCCGGT GGCGGCCTAT CTGCTCGCCT GGGCCTGGGT CACCAACGGC
GCGAGCCCGG GCGACGCGGC GCCGCTGCCC TACGTGCCGC TCTTGAATCC GCTCGAGCTT
GCGCAGTGGC TGGTGCTGTT TGCGCTGGTG CTGTGGTGGC GCGCCTTGCC GCCGGCGTCG
TTCGCGCGCG TGCAGCCCAT GGTGGCAAAG GGCGTGCTCG GCCTCACCGG CCTGGCGCTG
CTGACGGGCA TGGTGCTGCG CAGCTGCCAT CACTATGCGG GCGTCGAATG GCATTTCGAC
GCGCTCTACG CCTCGTGGCT CACGCAGGCG GCGCTTTCGA TCACCTGGGC CGTCTGCGGC
GTGGCCGCCA TGGTGCTCGG CCATGCACGC GGGGTGCGCA CCCTGTGGGT CGGCGGCGCG
GCGCTGCTTG GCGTTGTGGT GCTGAAACTG TTCTTTGTCG AACTGGCGGA CCGGGGCGGG
TTGTTCCGCA TCGTGTCGTT CATCGCGGTG GGCGCATTGC TGCTGCTGGT GGGCTATTTC
GCGCCCGTGC CGCCAAAGAA GATCGAAAAG GAGAAAGATG TTGTGTTGCC CGAAGGAGGT
GCAGCATGA
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| Protein sequence | MWFLGMIAGL FIGALAESVP AALILAVVGA FALPKIIGKK TAAEPARSEA ESAQPSNGAA
APPAGSMSTL QQRVAELEQR VSLLEQRLAQ GAGGAVLAPA IDPAVQAAPP VPLAMRPAAV
ADAGVAAVHV PLPEIRPAAI QPPPEAAAPA PARPPAAMPA PPRRPPPPPP PPPVPLRDRL
PAPIANLVFG GNMLVKLGVL ILFLGLAFLL RYTAERVTVP VELRYAAVAL VGAGLLALGW
LLRRKRTGYA LILQGAGIGV FYLTTLAAMK LHELLPPTAG FAFLFGVAVL SAVLAVLQNA
PLLAIVAVLE GFAAPVLAST GQNRPVGLFT YLLVLDVGIV LIAWFKAWRV LNLIGFVGTF
TLAAGWAHRY YTHDQYGIVQ PFLLVFFLLF VAIGLLFARR TLFDAPVQPA QPLAARALDT
LRRAGRVDSS LVFGAPMVAF GLQVLLMQPW EYGAAFSAMA LAAFYLVLGR LVFATQPKGL
ALLAEAYAIV GVIFGTLAIP LGLEGRWTGA AWAVEAAGMY WLGARQQRVY ARAFSFVVFA
GAVWKLLEAT QLDAAAGHPL LQGSVIGPLL VAVSAFAMWA IHRRAGLDEG NGWEALVGSA
LPWLGMGALT LLLWQWFTPP WAAAATAVLA SAAFAVSVRF QLRPLAFVSY GMQALAVAGF
IATLHQVADA HRGGEVLASG WQGAAAASLI ALSLLGSAAW SMLQAHRAAL ARGIQPVWSL
GNAIAVIAGV GLLHLAMLFQ LSLAQAALLW PITATVVLWV ALRIAHGPLA ALAGVLQLVS
ALLHVYGRIF HAEAAPPAFA HLGFWTPVVL GLAALLAGGW ISGEAGRRAT AGAGAAPRTR
WINDWCANSA ALWAPVVWGL GWWLFGWLDE SGEVLRRNGL AAHLAAAAVA IVLVTSALSA
LVAHRRGWPQ LGRATLATLP GLGLIAVHAV ALAAPLVYVP SSALGWIAWP LALLWHLRLL
HAQRRWLGAS ALVPFHVAGF WFFVLLAARE CQWQLGRIGA EWSSWQLLGW AIVPAVALWM
LRSRALLQRW PLAEYRAAYL EVAAMPVAAY LLAWAWVTNG ASPGDAAPLP YVPLLNPLEL
AQWLVLFALV LWWRALPPAS FARVQPMVAK GVLGLTGLAL LTGMVLRSCH HYAGVEWHFD
ALYASWLTQA ALSITWAVCG VAAMVLGHAR GVRTLWVGGA ALLGVVVLKL FFVELADRGG
LFRIVSFIAV GALLLLVGYF APVPPKKIEK EKDVVLPEGG AA
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