Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1531 |
Symbol | |
ID | 7973130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1649163 |
End bp | 1649852 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644792130 |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_002943448 |
Protein GI | 239814538 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGCCA CAACAACACC CCCCATCGGC GTCATGCTCG TGGACGACCA CCAGACCATG CTGTGGGGCC TGTCGAAGCT GATCGACGGC GAGCAGCCGC GCATGAAGGT CGTTGCCACG GCCAACTGCT TCGAGCAGGC GCTGGAGCGG ACCGAGCACC TGGTGCCCGA CGTGATCCTG CTCGACCTGG ACCTGGGGGG CCGATGCTCC CTCGACATCC TTCCCAAGCT GCTGTCGAAC GACGTCTCGC GCGCGCTCAT CCTCACGGCC GAGCGCAAGC AGCAGACGCT GGACCTTGCC GTGCTGCGCG GCGCCAGGGG CGTGCTGTGC AAGGACGCTT CGGCCGAAGA GGTGATCGAT GCGATTGCGC GCGTGCACAA CGGCGAACTG TGCATCGACG CGCAGGCCAT GGGCCGCGTG TTCTCCGAGC TGACCGCGCC GAAGAAGCCG GTGAAGGCAG ACCCCGAAGC GGCCCGGATC GCGAGCCTCA CGCAGAAGGA GCGGCAGATC ATCCGCGCCG TGGTGGAAGG CAGCGGCGCC GCGAACAAGA CGCTCGCCTC GCGGCTGTTC GTGACCGAAC ACACCTTCCG CAATCACCTC ACGTCGATCT ACCAGAAGCT CGACGTGGCC AACCGGCTCG AGCTTTACAT CTACGCGATC AAGCACCAGC TCGACGCTGC GCCCCATTGA
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Protein sequence | MQATTTPPIG VMLVDDHQTM LWGLSKLIDG EQPRMKVVAT ANCFEQALER TEHLVPDVIL LDLDLGGRCS LDILPKLLSN DVSRALILTA ERKQQTLDLA VLRGARGVLC KDASAEEVID AIARVHNGEL CIDAQAMGRV FSELTAPKKP VKADPEAARI ASLTQKERQI IRAVVEGSGA ANKTLASRLF VTEHTFRNHL TSIYQKLDVA NRLELYIYAI KHQLDAAPH
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