Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1114 |
Symbol | |
ID | 7969636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1221573 |
End bp | 1222244 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791710 |
Product | Transaldolase |
Protein accession | YP_002943031 |
Protein GI | 239814121 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAG ACTTCCATCT GTACCTGGAC AGCGCCGACC TGTCTGAACT GAAGACTTGC CTGCCGCATC CGGTGGTGCA TGGCGTGACG ACCAACCCCA CGCTGCTCAA GCGCGCCGGC ATCGGCCGCG GCGAAGTGCC CGGTCTGCTG AAACGCTGCA TCGAACTGGG CGCACGCCAG GTGCAGGCCC AGGTGTATTC CAGCGAAGTC GACGGCATGC TCGAAGACGC GGCCGCCTTG CTCTCGCACT TCGACCGGGG CCAGCTGGTC GTGAAGATTC CCGCCACGCG CCAGGGCCTC GACGCCGGCG CGCGGCTCAT CGCGCAGGGC GTGCCCGTCA CCTGGACCGC CGTGTATGCG CCCGAGCAGG CCCACTTTGC CGCGCAGCTG GGCGCGGCCT ACGCGGCACC GTACCTCGGC CGGCTCGACG ATGCCGGCGT CAACGGGCTG GCGCTGATCG CGCAGATGCA GGCGCTGGTG GCGCTGCGGC CTTCGTCGGG CACGCGCCTG CTGGTCGCCA GCATCCGCTC GCGCGAGGCC TATCTTGCGT TGCTGGCGCT GGGCGTGGGC GCCATCACGA TTCCGCCGCG CCTCTTTGCC GAGCTGCTCG ACCACCCCGC CACGCTGGCC GCGGAGCGCG GCTTCCTGGC CGATGCGCGC GCCTTGCCCT GA
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Protein sequence | MTEDFHLYLD SADLSELKTC LPHPVVHGVT TNPTLLKRAG IGRGEVPGLL KRCIELGARQ VQAQVYSSEV DGMLEDAAAL LSHFDRGQLV VKIPATRQGL DAGARLIAQG VPVTWTAVYA PEQAHFAAQL GAAYAAPYLG RLDDAGVNGL ALIAQMQALV ALRPSSGTRL LVASIRSREA YLALLALGVG AITIPPRLFA ELLDHPATLA AERGFLADAR ALP
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