| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1090 |
|---|
| Symbol | |
|---|
| ID | 7969612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1193944 |
|---|
| End bp | 1195218 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791686 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_002943007 |
|---|
| Protein GI | 239814097 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.321453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTTG TCGCAGCAGC TGCAGCACCG CGACTGCGGG CCTCGGGCAG GGCGTTTGCG
CACATTGCGA GCTTCTATCC GGAGATCACG GCCTTTCGCC GCGACCTGCA CGCCCACCCC
GAGCTCGGCT TCGAAGAGGT CTACACGGCC GGCCGCGTGC GGGAAGCGCT GCGTGCCTGC
GGCGTGGACG AGATCCACGA GGGCATCGGC AAGACCGGCG TGGTGGGCGT CATCCGCGGC
CGCTCCACGG CGAGCGGCCG GATGATCGGC CTGCGCGCCG ACATGGATGC GCTGCCCATG
CGCGAGGACA ACGACTTCGG CTGGCGCTCC GCCAACGACG GCCTGATGCA CGGCTGCGGG
CATGACGGCC ACACGGCCAT GCTGGTCGGC GCGGCGCGCT ACCTGGCCGA GACCCGCAGC
TTCGACGGCA CCGCGGTGCT GATCTTCCAG CCTGGCGAAG AAGGCTTTGC CGGCGCGCGC
GTGATGATCG AGGACGGCCT GTTCGACCGC TTTCCCGTCG ACGCGGTCTA TGCCATGCAC
AACTGGCCAG CCATGCCCGC GGGCACCGTG GGCATCAACC GCGGTGCCAT GATGGCCGCG
GCCGACCGCG TCACGATCGA GATCAAGGGC AAGGGCGGCC ACGGCGCCCA CGCCTACCAG
ACCATCGACC CCGTGGTGGT CGCCGCGCAC ATCATCACGG CCGCGCAGAC CATCGTGTCG
CGCAGCGTGC GGCCGATCGA TGCGGCGGTG GTCAGCATCT GCGCGGTGCA GGCAGGCGAC
CTGGGCGCGA TGAGCGTGAT CCCGGGCGAG GCCACGCTGG TGGGCACCGT GCGCACCTTC
AGCGCGCGCG TGCAGGCGCA GGTCGAGCAG CGCCTGACCG AGCTCTGCAC GGCCGTGGCC
GCGGGCTTCG GCGCCACCGC CACCATCAGG TACGAGCGCA TCTACCCGGC CACCATCAAC
ACCGCACCGG AGGCGATGTT CGCGGCCGAC GTGGCCGAGT CGCTGGTGGG CGCTTCCAAT
GTCGAGCGCA GCATGGAGCC CAGCATGGGC GCCGAGGACT TCTCCTTCAT GCTGCAGAAA
AAGGCCGGCG CCTACCTGCG CATCGGCCAG GATGCCAAGT GCGGCGCCTT CCTGCACAAC
AGCCGCTACG ACTTCAACGA CGAGATCCTG CCGCTTGGCG CCGCATTGCA TGCGGGGCTG
ATCGAGCAGG GCATGCCGCT GGCTGCCACC CGCAGCCAGC AGCCCGTGAA AGACGCCGCT
ACCGCGACGC CTTGA
|
|---|
| Protein sequence | MTVVAAAAAP RLRASGRAFA HIASFYPEIT AFRRDLHAHP ELGFEEVYTA GRVREALRAC
GVDEIHEGIG KTGVVGVIRG RSTASGRMIG LRADMDALPM REDNDFGWRS ANDGLMHGCG
HDGHTAMLVG AARYLAETRS FDGTAVLIFQ PGEEGFAGAR VMIEDGLFDR FPVDAVYAMH
NWPAMPAGTV GINRGAMMAA ADRVTIEIKG KGGHGAHAYQ TIDPVVVAAH IITAAQTIVS
RSVRPIDAAV VSICAVQAGD LGAMSVIPGE ATLVGTVRTF SARVQAQVEQ RLTELCTAVA
AGFGATATIR YERIYPATIN TAPEAMFAAD VAESLVGASN VERSMEPSMG AEDFSFMLQK
KAGAYLRIGQ DAKCGAFLHN SRYDFNDEIL PLGAALHAGL IEQGMPLAAT RSQQPVKDAA
TATP
|
|---|
| |