| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1068 |
|---|
| Symbol | |
|---|
| ID | 7969590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1170955 |
|---|
| End bp | 1173159 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791664 |
|---|
| Product | phospholipase C, phosphocholine-specific |
|---|
| Protein accession | YP_002942985 |
|---|
| Protein GI | 239814075 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3511] Phospholipase C |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR03396] phospholipase C, phosphocholine-specific, Pseudomonas-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.233331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCAC GCCGCAGCTT CCTCACAGCC ACCGCCACCA CCGGCGCCGC CGCGCTCGCG
CTCTCGGCCT TTCCGCCGAG CATCCGCCGC GCGCTCGCCA TTCCCGCCAA CAACAAGACC
GGCACCATCA AGGACGTGGA GCACATCGTC ATCCTGATGC AGGAGAACCG CTCGTTCGAC
CACTACTTCG GCACGCTCAT GGGCGTGCGC GGCTTCGGCG ACCGCTTCAC CATTCCGCTG
CCGCAGGGCC GCAGCGTCTG GCAGCAGCTC GACGACACCG GCAAGGAAGT GCTGCCCTAC
CACCTGGACG GCTCCAAGGG CAACGCGCAG CGCGTGGCCG GCACACCGCA CAGCTGGAGC
GACGGCCAGG CTGCGTGGGC GGGCGGGCGC ATGTACGAAT GGGTGCGCTA CAAGAAAACG
AAGATGGCGC CTTTCACGCA GTCGATGGGC TATCTCGAAG AGGCGGAACT GCCCTTCCAG
TTCGCGCTGG CCAACGCCTT CACGCTCTGC GATGCCTACC ACTGCAGCAT GCACACCGGC
ACCAATTCGA ACCGCATGTT CCTCTGGACC GGCACCAACG GCCCCACCGG CGCGAACGTG
GCCACGGTCA ACAACGAATG GGATTCGATC GACAGCTCGG CCAACGGCTA CAGCTGGAAG
ACCTACCCCG AGCGGCTGCA GGAAGCCAAG GTCAGCTGGA TCGTCTACCA GAACATGCCC
GAGAATTTCG GCGACAACTC GCTGGCCGGC TTCAAGCAAT ACCGGCTCGC CAACGAGGCC
TCGGGCAAGC CCGTGAGCAA CGACGTGGCC TCGCCCGCCT ACGATCCGGC CAGCGACGAC
GCCGGCAATC CGCTCTACAA GGGCATTGCC AACACCATGC CCGACGGCGG CTTTCTCGAG
CAGTTCCGCC AGGACATCAG GAACGGCAAG CTGCCGCAAG TGTCGTGGAT CGTCGCGCCC
GCGACCTATT CCGAGCACCC CGGCCCGTCG AGCCCGGTGC AGGGCGCCTG GTACATCCAG
GAAACGCTCG ATGCGCTCAC TGCCGTGCCC GAGGTGTGGA GCAAGACCGT GCTGTTCATC
AACTTCGACG AGAACGACGG CTACTTCGAC CACGTTCCTT CGCCGGCCGC GCCTTCGATC
GACGCCGGCG GCACGCCCGC AGGCAAGACC ACGCTGCCAG TGCAAGCGCT CGCGCCCGAA
TACTTCAACC ATCCGAATCC GCCCGGCACC ACCGACCAGC CGCCGCCCGA CGGCCGCGTC
TACGGCCCCG GCGTGCGCGT GCCGATGTAT GTGGTGTCGC CCTGGAGCCG CGGCGGCTGG
GTCAACTCGC AGGCCTTCGA CCACACCTCG GTGCTGCGCT TCATCGAGAC GCGCTTTGGC
GTGAAGGAAT CCAACATCAG CGATTTCCGC CGCGCGGTGT GCGGCGACCT CACGAGTGCC
TTCAACTTCG CCACGCCCAA CACGGAAGCG CTGCCCGCGC TGGCGGGGCG CACGACCAAA
GCGGACGCCG ACAAGCTGCG TGCCGACCAG CAGGCCCTGG CGCAAGTGGC ACTGCCGCTC
GACCCGCTGC TGCCGCGCCA GGCCACCGGC ACGCGGCCCT CGCGCGCGCT GCCCTACGAG
CTGCACACGA GCGCCCGTGC CGATGCCATC GGCGGAAAGA TCCAGCTGCT GTTCGCGAAC
ACCGGCACCG CCAGCGCGGT GTTCCACGTC TACGACAAGC TCAACCTCGA CCGCCTGCCG
CGCCGCTACA TGGTCGAGCC CGGCAAGACG CTCGACGACA CGTGGAACGC GATGCGCGAC
GACAGCGGCT TCTACGACCT GTGGGTGCTC GGGCCCAACG GCTTCCATCG CCACTTCAAG
GGCGACCTGA ACGCGCTTCG CGCCGGCGAT GCGGCCGTGC CCGAAGTGCG CGTGTGCTAC
GACATCGCCA ACGGCAACGT GTACCTGGAG ATGCGCAACG ACGGCAAGAG CGCCTGCAAG
TTCACCGTGC GTGCCAAGGC CTACCGCAAC GACGGTCCGT GGACCGCGAC GGTGGAAGGC
GGCGCCAAGG CCGAGCTGCA CTGGGATCTG GCAGCGAGCG GCGCGTGGTA CGACTTTGCC
GTGCGATGCG ATGCGGACAC CAGCTTCGTG CGCCGCTTTG CCGGCCGCGT CGAGACCGGC
CGGCATTCGG TGAGCGACCC GGCAATGGGC CTGGCCGATC TCTGA
|
|---|
| Protein sequence | MTSRRSFLTA TATTGAAALA LSAFPPSIRR ALAIPANNKT GTIKDVEHIV ILMQENRSFD
HYFGTLMGVR GFGDRFTIPL PQGRSVWQQL DDTGKEVLPY HLDGSKGNAQ RVAGTPHSWS
DGQAAWAGGR MYEWVRYKKT KMAPFTQSMG YLEEAELPFQ FALANAFTLC DAYHCSMHTG
TNSNRMFLWT GTNGPTGANV ATVNNEWDSI DSSANGYSWK TYPERLQEAK VSWIVYQNMP
ENFGDNSLAG FKQYRLANEA SGKPVSNDVA SPAYDPASDD AGNPLYKGIA NTMPDGGFLE
QFRQDIRNGK LPQVSWIVAP ATYSEHPGPS SPVQGAWYIQ ETLDALTAVP EVWSKTVLFI
NFDENDGYFD HVPSPAAPSI DAGGTPAGKT TLPVQALAPE YFNHPNPPGT TDQPPPDGRV
YGPGVRVPMY VVSPWSRGGW VNSQAFDHTS VLRFIETRFG VKESNISDFR RAVCGDLTSA
FNFATPNTEA LPALAGRTTK ADADKLRADQ QALAQVALPL DPLLPRQATG TRPSRALPYE
LHTSARADAI GGKIQLLFAN TGTASAVFHV YDKLNLDRLP RRYMVEPGKT LDDTWNAMRD
DSGFYDLWVL GPNGFHRHFK GDLNALRAGD AAVPEVRVCY DIANGNVYLE MRNDGKSACK
FTVRAKAYRN DGPWTATVEG GAKAELHWDL AASGAWYDFA VRCDADTSFV RRFAGRVETG
RHSVSDPAMG LADL
|
|---|
| |