Gene Vapar_0937 details

Gene Information

• Locus tag: Vapar_0937
• ID: 7970112
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1029378
• End bp: 1031438
• Gene Length: 2061 bp
• Protein Length: 686 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644791533
• Product: ribonuclease II
• Protein accession: YP_002942854
• Protein GI: 239813944
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.371224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGTAT TGTTTGAAGA AGCCGGCAAG TACCTCGGCG GCCGCGTGCT GTCGGAGGCC 
GAAGCATCGG CGCAGGTCGA GCTCGACACC GGCAAGCGCG TCAAGGTCAA GGGCGCCAAC 
ATCGTTCTGC GTTTCGAGAA GCCGGCCCCG GCCGAGCTGA TCGTCGAGGC GCGCGCGCTC 
GCGGCCACGA TGGACCTCGA CCTGGCCTGG GAATTCGCGC CGGAGGGCGA ATTCGGCTTT 
GCCGATCTCG CATCCGACTA TTTCAGCGAC AAGCCCACGC TCGCGCAGCA GGCCGCGGCG 
CTGTTCGCGC TGTTCGAGGC GCCGCACTAC TTCCGCCGCG CGGGCAAGGG GCGCTTCAAG 
AAGGCACCGG CCGAGATCCT GCAGCAGGCG CTGGCCGCCA TCGAGAAGAA GAAAGTGGTG 
CAGGCGCAGA TCGTCGAATG GGCCGCCCAG CTGGCCGAGG GCATCTGCCC GCAGCCGATC 
CGCGAGCAGC TCTACAAGAT CCTGTTCAAG CCCGACAAGA ACGCGCCCGA ATACAAGGCC 
GTGGTCGACG CCGCGCGCGC CACCCAGCGC CCGCCGCTCG AACTGCTGGA ACGCGCCGGC 
GCCATCGACT CGCCCTACCA GTTCCACTGG CGGCGCTTCC TGTTCGAGAA TTTTCCCAAG 
GGCACGGGCT TCCCGGCGCT CGCCGCGCCG CCCATCGTGG ACGACCTGCC GCTGGCCGAA 
GGCGTGCAGG CGTTCTCGAT CGACGACTCG CAGACCACCG AAATCGACGA CGCGCTGTCG 
GTGCAGGGCC TTGGCAGCGG CACCGTCACG GTCGGCATCC ACATTGCCGC GCCCGGCCTG 
GCGCTGACCC CGGGCAGCGC CATCGACCAG GTGGCGCGCG CGCGCATGTC CACGGTCTAC 
ATGCCGGGCC ACAAGATCAC CATGCTGCCC GACGAAGTCG TGAGCACCTA CACGCTGCTA 
GAAGGCGGCG ACCGGCCGGC GGTGTCGCTC TACGCGCGCT TCGACGAGAC CACGCTCGAG 
CTGCAGTCGA CCGAGACGAA GCTCGAACGC GTGCCGATCG TGGCCAACCT GCGGCACGAC 
CAGCTCGACG CCGTGGTCAC GCAGCCCTGG CTCGAAGACG CCTCGTTCAC GAGCGAGAAC 
ACGCCCGAAG CCGCTGCGAA GCTGCGCGCG CCGCTCTCGT TCCTGTTCCG CCTCGCCAAG 
CAGCTGAAGG CCCAGCGCGA AGTGGTGCGC GGCAAGCCCG AGAACTTCAA CCGGCCCGAC 
TACAACTTTC GCCTCGTGGG CAACGACGGC GAACCGAACG GCAGCGAACA GGTGCAGATC 
ACCACGCGCC AGCGCGGCGC ACCGCTCGAC CTGATCGTGT CCGAGGCCAT GATCCTGGCC 
AACAGCAGCT GGGGCGGCTG GCTCGGCGAA CTCGGCGTGC CCGGGCTCTA CCGCAGCCAG 
GCCAGCCTGG CGCCCGGCAT CAAGGTGCGC ATGGGCACGC GGGCCTTGCC GCATGCGGGC 
CTGGGCGTGA AGAGCTATGC CTGGAGCACC TCGCCGCTGC GCCGCTACAC CGACCTCGTG 
AACCAGTGGC AGATCATTGC CGCCGCGCGC CACGGCAAGA CCGCCGCGCT GGCCGCGCCG 
TTCAAGCCCA AGGATGCGGA CCTGTTCTCC ATTCTCTCGG GCTTCGATGC TGCCTACGCA 
ACCTACAACG CCTACCAGGG CGGCATGGAA CGCTTCTGGA CGCTCAAGTA CCTGGAGCAG 
CAAGGCATCA CCGAGCTCGA GGCGACCGTC ATCAAGGACA TTCCGAACGG TGCCCTGGTG 
CGCGCGGACA CCCTGCCGCT GGTGTTCCCG GTGGCGGGCC AGCAGGAGCG CGGCGCGCGC 
CTGCGCGTGA AGCTCGGCGA GATCGACGAG ATCGCGCTCG ACGTGCACGG CACCGTGCTC 
GAGCGCCTCG ATGCGCCCAA GGCCGATGCC GCGGCCGAGG AGGAAGGCGG CGACGAGGAA 
GTGGAAGAAG TCGCCGGCCC CATCGCCATT GCAGTCGACC TCAGCGACAG CGAGGCGGCC 
CCGGAAAACA CGCCGGCATG A 

 

Protein sequence

MFVLFEEAGK YLGGRVLSEA EASAQVELDT GKRVKVKGAN IVLRFEKPAP AELIVEARAL 
AATMDLDLAW EFAPEGEFGF ADLASDYFSD KPTLAQQAAA LFALFEAPHY FRRAGKGRFK 
KAPAEILQQA LAAIEKKKVV QAQIVEWAAQ LAEGICPQPI REQLYKILFK PDKNAPEYKA 
VVDAARATQR PPLELLERAG AIDSPYQFHW RRFLFENFPK GTGFPALAAP PIVDDLPLAE 
GVQAFSIDDS QTTEIDDALS VQGLGSGTVT VGIHIAAPGL ALTPGSAIDQ VARARMSTVY 
MPGHKITMLP DEVVSTYTLL EGGDRPAVSL YARFDETTLE LQSTETKLER VPIVANLRHD 
QLDAVVTQPW LEDASFTSEN TPEAAAKLRA PLSFLFRLAK QLKAQREVVR GKPENFNRPD 
YNFRLVGNDG EPNGSEQVQI TTRQRGAPLD LIVSEAMILA NSSWGGWLGE LGVPGLYRSQ 
ASLAPGIKVR MGTRALPHAG LGVKSYAWST SPLRRYTDLV NQWQIIAAAR HGKTAALAAP 
FKPKDADLFS ILSGFDAAYA TYNAYQGGME RFWTLKYLEQ QGITELEATV IKDIPNGALV 
RADTLPLVFP VAGQQERGAR LRVKLGEIDE IALDVHGTVL ERLDAPKADA AAEEEGGDEE 
VEEVAGPIAI AVDLSDSEAA PENTPA