Gene Vapar_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0906 
Symbol 
ID7970081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp996965 
End bp997588 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content66% 
IMG OID644791502 
Producttranscriptional regulator, TraR/DksA family 
Protein accessionYP_002942823 
Protein GI239813913 
COG category[T] Signal transduction mechanisms 
COG ID[COG1734] DnaK suppressor protein 
TIGRFAM ID[TIGR02420] RNA polymerase-binding protein DksA 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGCTC AGACCGCCGC ACCCGCCCCC GCGCGAGGTG GCCGCGTGTC CCGGCTGTCG 
CAGCTGACCG TGCCTTCCAT GCCGCAATCG GTGGCTTCCA CCGCGGCCAA GTCTTCGTTC 
TCGCAGGCGC CTTCCAATGC GCTGGTGCCG CCGCCTCCCG TCGCGGTCAA AAAAGACCCG 
AAGCTCGCCA ACAACTGGAA AGCCAAGTCG GCTGCCGAGT TGACCGATGC CGAGGTGATC 
GCCATGCCCG ACTCCGAGTA CATGAATGAA AAGCAGATGG CGTTCTTCCG CCTGAAGCTG 
GTCGAACTCA AGCGCGGCAT TCTCGAAAAC GCCGGCGAAA CCACCGAGCA CCTGCGCGAA 
GACACCGTGG TGGTGCCCGA TCCGGCCGAC CGCGCCACCA TCGAGGAAGA GCATGCGCTC 
GAGCTGCGCA CGCGCGACCG CGAGCGCAAG CTGCTCAAGA AGATCGAGCA GTCGATCCAG 
CGCATCGATG CCGGCGACTA CGGCTACTGC GACGAAACCG GCGAACCCAT CGGCGTCGGC 
CGCCTGCTGG CGCGTCCCAC CGCCACGCTC TCGCTCGAAG CGCAGCAGCG CCGCGAACTC 
AAGCAGAAGA TGTTCGGGGA CTGA
 
Protein sequence
MPAQTAAPAP ARGGRVSRLS QLTVPSMPQS VASTAAKSSF SQAPSNALVP PPPVAVKKDP 
KLANNWKAKS AAELTDAEVI AMPDSEYMNE KQMAFFRLKL VELKRGILEN AGETTEHLRE 
DTVVVPDPAD RATIEEEHAL ELRTRDRERK LLKKIEQSIQ RIDAGDYGYC DETGEPIGVG 
RLLARPTATL SLEAQQRREL KQKMFGD