| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0618 |
|---|
| Symbol | |
|---|
| ID | 7973603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 675142 |
|---|
| End bp | 676194 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644791225 |
|---|
| Product | Malate/L-lactate dehydrogenase |
|---|
| Protein accession | YP_002942546 |
|---|
| Protein GI | 239813636 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2055] Malate/L-lactate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG TCAGCGTCAG CGTCCATGCG CTGCGCGGCC TCACGGCCGC CCTCTTCCGT
TCCCAGGGCC TGACGGCCCT CAGGGCCGCC AGCGTCGCCG ACTCGCTGGT CTGCGCCGAC
CTTGAAGGCG TGGCCTCGCA CGGCGTGGCC CTGGTGCCGC TCTACCTGGA GCGCATCAGC
AAGGGCAGCG TGGATCCCCA CGCCGAGCCC CTGGTCGTCG AAGACCACGG CGGCCTGGTC
GTGATGTCGG CGCAGAACGC ACTGGGCCAG GTCTCGGCCG CTGTGGCCGT CGAGCTCGCG
GCGGCGCGGG CCCGCGAGCA TGGTGTGAGC GTGGTCAGCG TGCGCCACGC CTTCCACTTC
GGCACGGCCT CGTATTGGGC ACGCCAGTTC GCGGCTGCCG GCATGGTCGG CTTCGCGTTC
TCCAACACCC GGCCCTTGAT GCCCGCACCG GGCGGGGCCG AGCGGGTGGT CGGCAACAAT
CCAATGGCCA TCGCCATTCC CGCCCGCGTG GACGAACCTC TAGTGGTCGA CATGGCCATG
AGCGCCACGG CCATGGGCAA GATCCGCCTG GCCGAAGCCA ACGGCGAAGC GATCCCGACA
GGCTGGGCCA CGGACGCGGC CGGCCGGGCC ACGACCTCAG CCACCGAGGC CATCCAGGGC
ATGTTACTGC CCGCGGCAGG CCCCAAGGGC TTCGGCCTGG CCGTGGCCAT CGACCTCCTG
TGCGGGGCGC TCTCCGACGG CGCGGTGGGC GCCGCAGTGC GCCCGCTCTA CGGCGAGCTC
GACAAGCCCT ACGACTGCTC GCACGCCTTC ATCGCCATCG ACGCCGCGCG ACTCCACGGC
GGCGCCGGCA TCGCTCCGCA GGTGGCCGGC TTCGCCCAGG CTATCCGCGA TTCCCGGCGC
GCGCCTGGCA CCGAGCGCAT CTACGCGCCC GGTGACCTCG AACGCGCGCG CCGCGCCGGC
AACGGCGAGC ACTGCCCGAT CGCGGGCGAG CTGGCGCAAC GGCTCAACCA ATTCGCGGCG
GACGCCGGCA TCCCCGAACG CGTCGCCGCC TGA
|
|---|
| Protein sequence | MSQVSVSVHA LRGLTAALFR SQGLTALRAA SVADSLVCAD LEGVASHGVA LVPLYLERIS
KGSVDPHAEP LVVEDHGGLV VMSAQNALGQ VSAAVAVELA AARAREHGVS VVSVRHAFHF
GTASYWARQF AAAGMVGFAF SNTRPLMPAP GGAERVVGNN PMAIAIPARV DEPLVVDMAM
SATAMGKIRL AEANGEAIPT GWATDAAGRA TTSATEAIQG MLLPAAGPKG FGLAVAIDLL
CGALSDGAVG AAVRPLYGEL DKPYDCSHAF IAIDAARLHG GAGIAPQVAG FAQAIRDSRR
APGTERIYAP GDLERARRAG NGEHCPIAGE LAQRLNQFAA DAGIPERVAA
|
|---|
| |