| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0201 |
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| Symbol | |
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| ID | 7971410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 210545 |
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| End bp | 212878 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644790804 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002942130 |
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| Protein GI | 239813220 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAGAG TCGTACGAGC GCACACCCCG CTTGGGGAAG ACCAGCTCCA GTTCCGCTCG
ATGCATGGCA CCGAGGGACT GTCGCAGTTG TTCGAATTCG AGGTCGACCT GCTGAGCCCG
AGCGCGTCGA TCGACATGAA AGCGGTGCTC GGAAAACCCA TGGCCCTGGA GATCCAGACA
GCCGGCACGC CCCGTTTCCT GAACGGCCAG GTGGTCCGCT TCTCCATGAT CGGACGCGAA
GGCGGTACCT CGCGCCACAC CGTCTATCGT GCTTCGGTGC GCCCATGGCT CTGGTATCTC
ACGCGCTCCA GCGACAACAA GATCTTCCAG AACAAGACGG TCGTCGAAGT TCTCGAGGAC
GTATTCGGCG ACTACAACTT CGCCTTCGAG AAGAAGCTCA CCGGCACCTA TCGCCAGTGG
GAGCACTGCG TGCAGTACAA CGAGACGGAC TTTGCCTTCG TGAGCCGGCT CATGGAACTC
GAAGGCATCT ACTACTACTT CAAGCACGAC AAGAACCAGC ATACGCTGGT GCTGACCGAC
GACGTCACGA TGCACGAGCC GATGTCCGGC TACGAAACCA TCAATTACTT CGCGGCCGAT
CGCGACGTGA CCGAGGACAT GGAGGTCATC GACAACTGGC AAGTGACGGC CGAGATCCGC
TCGGGCAGCT ATGCGGTGGA TGACTACAAC TTCACCACGC CGGGCGCCGA TCTGAGCGGT
GCCCGCTCCA TGCCGCAGCC GTACGACCAC TCGGGCTATG AGATGTACGA GTGGCTCGGC
GAGTACACGA ACCCCGGGGA AGGCGAGCAC TATGCGCGCG TGCGGCTGGA AGAAGCGCAG
TCGATGGCCG AGCGCAGCGT GGGCCATGCC ACGGTCCGGG GCATGGCGCC CGGCTACACC
TTCTCGATGC AGAACTCGCC GAGGTCGGAC GACAACCGCG AGTACCTGAT CGTTTCGGTG
AACTACATGC TGCGCGAAGG CGGCTACGCC ACCGGAGCCG CACCGGGCGA ATACAGCTTC
AACTTTGTCG TCCAGCCGAC GTCCCTGCCC TTCAGGGCAC CCCGGATCAC GCAAATCCCC
AGGACCACCG GTCCGCAGAC CGCGGTGGTG GTCGGCCCCG AAGGCGAGGA AATCTGGACC
GACCAGTACG GCCGCGTCAA GGTGCAGTTC CGGTGGGACC GCAGCGGGCG CCGCAACGAG
AACTGCTCGT GCTTCGTGCG TGTGTCCCAT GTCATCGCAG GCGACGGCTT CGGTGCTGTT
TTCACGCCGC GCATCGGCCA GGAAGTGGTG ATCGATTTCG TCGACGGGCG GGCCGACCGG
CCGCTCGTCG TGGGGCGGGT CTACAACCCG CGCCAGATGC CACCCTTCAA TCTGCCGGGC
GAGCAGACCA AGAGCGGGTT CGTCACGCGT TCTACGCCGG GCGGCTCGCC GGAAACCGCC
AACTCGCTCG TCTTCGAAGA CAAGATGGGC GCTGAATACG TAGCGCTTCA TGCAGAGCGC
GACCTGAATG TCTCGGTGGA GAAGAACGAG ACCCACGACA CCGGTGGCAC GCGCACGACC
GTCATCGTGG GGCATGAATC GGCCACCTAC AAAGCCGGCG AAGAACGTCA TATCACCGAG
GGCGCGGTGG AGACGATCGA CGGCGGAGAG ACTCGCACGG TGACCGGCGG AGCGACCGAG
ACAGTTTCCG GCGGCGAGAC GCGGACGATT TCGGACGGCG CGACCGAGAC GATCAGCGGC
GGCGAAACGC GCACTGTCAG CGGAGGGTTC ACGGAAACCA TCAGCGGTGG TGCGACCGAG
ACGATCAGTG GAGGTGTGAA CTCGACGATC ACCGGCGGCG TGACCCAGAC GATCACGGGC
GGCGTGAACG AGACCATCAG CGGCGGCCTT ACCTTCATGG TGAATGGCGG GGTCACCAGC
AACGTCCTGG GCAACCACAC GCATGTCGTC ACGGGGGGCA GCACGACCAC CACGACCGGA
CCCACGATCA ATAACGCGCC GGACATTGTT GACAACTCGG ACAGGCGGAC GATCAATGCG
GGCGACAACA CCGTCAACGC AGCCAAGGAA GGCTGGTGGC GCAACACGGA CAACCACGGA
ACGCTCGAAC ATACGGGCGT CAATGTGGCG GCAGTCGATG TCAATGGCGT GAAGCTGCAA
TTCTCGGGGG TGAACGGCCA GTTCAACGGC GTCTTCATCA ACCTGTCCGT GACCAGCATC
ATCGATGCGA AGTTCAAATA CAAGCTCAAT CCCGTTGGCA TCTCGACAGT CGGACTCAGT
CTCAAGACCG GCTACATCGC AGTGGCATTC AAGAGCCTTT TCATGAAGGC CTGA
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| Protein sequence | MARVVRAHTP LGEDQLQFRS MHGTEGLSQL FEFEVDLLSP SASIDMKAVL GKPMALEIQT
AGTPRFLNGQ VVRFSMIGRE GGTSRHTVYR ASVRPWLWYL TRSSDNKIFQ NKTVVEVLED
VFGDYNFAFE KKLTGTYRQW EHCVQYNETD FAFVSRLMEL EGIYYYFKHD KNQHTLVLTD
DVTMHEPMSG YETINYFAAD RDVTEDMEVI DNWQVTAEIR SGSYAVDDYN FTTPGADLSG
ARSMPQPYDH SGYEMYEWLG EYTNPGEGEH YARVRLEEAQ SMAERSVGHA TVRGMAPGYT
FSMQNSPRSD DNREYLIVSV NYMLREGGYA TGAAPGEYSF NFVVQPTSLP FRAPRITQIP
RTTGPQTAVV VGPEGEEIWT DQYGRVKVQF RWDRSGRRNE NCSCFVRVSH VIAGDGFGAV
FTPRIGQEVV IDFVDGRADR PLVVGRVYNP RQMPPFNLPG EQTKSGFVTR STPGGSPETA
NSLVFEDKMG AEYVALHAER DLNVSVEKNE THDTGGTRTT VIVGHESATY KAGEERHITE
GAVETIDGGE TRTVTGGATE TVSGGETRTI SDGATETISG GETRTVSGGF TETISGGATE
TISGGVNSTI TGGVTQTITG GVNETISGGL TFMVNGGVTS NVLGNHTHVV TGGSTTTTTG
PTINNAPDIV DNSDRRTINA GDNTVNAAKE GWWRNTDNHG TLEHTGVNVA AVDVNGVKLQ
FSGVNGQFNG VFINLSVTSI IDAKFKYKLN PVGISTVGLS LKTGYIAVAF KSLFMKA
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