| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_p840_08 |
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| Symbol | traC |
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| ID | 6961435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011311 |
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| Strand | + |
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| Start bp | 4191 |
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| End bp | 6722 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | |
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| Product | conjugative transfer protein TraC |
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| Protein accession | YP_002261498 |
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| Protein GI | 215778358 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTAA CGTTACTGAA AAAACACAGT AAAACGGAGC ACAACCACCT TCATCATCAA
TTGCCTTATC GCTTTTTTGA TGATGAGCAC ACGCTCTTTC ACAACACCAC ATCCATTGGC
TTTGGGTTTC AACTCAACGT CCTTGGCGGC GCCAATGACA GTGCCATTGA AGCGTTAAAC
AAAATCCTAA CCACCTTGCC TCAAGGCAAA CAATGGGATT ACCAATTCAC CCTAACCTCC
AACCATCAGG TCTCGCACCT GATTGAGCAA AACACCGCCT TAATGAGCAA ACGTGGCGGC
ATTTGTGCAC GATTGGCCAA CAATGAGCGC ACCTACGCCG ATTTCGCGTC AACCTCTGGG
TTTTTGCATC GCCAAAAACA CCACTTCACG CTGCGTGAGC ACCACAGCTT TTTGTTTGTC
TCAACCACAA GCCGTGACAT TGATAAAATC AATGACACCA AGGCGACGCT TTACACCTCA
TTGACGCAAC TTGGCCTGAC ACTGACCCCG ATTGGCGTTC CTGAATTAAT CTCGTACGTC
GATGGCCATT TAAATTTTAA TGCCAACAAA ACTCGCCCAG AAAAGGCAAC ATACAATGAG
CACGAGCCGT TGCATACGCA AATGCTCTCA CCTGACAGTG AGTTTTTAGT CTCAAGAGGC
CACGTGGACA GCCGCCACAC GGACAATAAG CACGGTGAGC AAACCAGTCG AGTCATCAAC
TTTGGGTTAC TCAGACTGCC CAGCGATTTT CGCCTTTACG CGTTGCCAGA ATGCTTCTCT
TCGTTAAAAA ATGTGGCGCA AAGCATCAAC TGTCCGTTTA CCTGTAGCGT CCAATTTCAA
ATTGAAGACA ACGGCAAAGC CACGGCGGAT AACGACGGGC ACATCAGCGC CCTCATGAAA
ACCGTGGGCT CAAAAATGCA AGTGTTGGTC CCGACGGCCA AAGACGAACT GGCCGAGCGA
AAACAAATAC AGCTCGGGCT GCTCTCTAAA GAGTTCACCA TGGTGTCAAT GGTCATGAAC
CTCAGCCTCT TTAGTTCCAA AGAGAAGCAA CGCGACGACA GCCAAGCCGC CGTCAGTGCG
TTTTCAAGCG GCGGCATTGA TATCGCGCCC CTCAATATGT TGCAAGGTCA CGCCTATCTC
TCTTCCCTTC CTTTTATGAT GAGCGAAGGC TTTTGGAAAG ACAGCAAACG CGCAGGGCGC
ATTCGCACCA TGAAAAGCTC CAATGCCGTG AACTTCTTCC CCATCATTCA TGACAACAAA
AACTTCAGTG GCGGAATGCT GCTGCCCACC ATGCGCCAAC AGATTTCCTT TTTCGACCCG
TTTAATTGTG GCAGCGACAA CTACAACATC GCCTTAACGG GCGGCTCTGG GGCCGGAAAA
TCCTTTTTTG TTCAACTGCT CGCCAAATCG GTCTACTCCA AGTTTGGGAA AGTGTGGATA
TTGGACAAAG GCGCCAGCTA CAAAAAACTG ACCCTCATGC TTGAGGGCAC CTACATGACC
TCAAAAGAGA TATTTCTGAA TCCCTTTACC CACCTTGGAA AAATCAAAGC CAAAAGTGAG
CACGAGGCGT CGGTAGACGA CGAGTTAAAT CCCCTTGCCG AAGTGCTCGA CAACATCACC
GCCCTGTTTG CCACGATGGC GTCTCCACGT GAAGAATTGG ATCCCTTTCA AACCGCCGTC
CTTGGGGACG CGATTTTGAA CGCGTGGAAC GACAAAGGCC CTCTCACCCG TGTGGATGAC
GTTCAAGCCG CTTTGTTTGC TATCTCAACA GAGAGCGACA ACGACCGACG CATCAGTGAC
ATTGCCACGC AACTCAACAA GTATTGCAGC AATAACGTTT ATGGGGACAC GTTTAACAAA
CCCTCCATGC TAAACCCTAA CATTCACATC ACGACCCTTG AGCTAGACGG ATTTCCAGAG
GCGGTGCTTC GTCCGGCCAT CTTTGCGTTG ATGGTCTCCA TCAACCAGCA AATGTATTTA
ACCGGCTCTC GCTCAACCCC AAAACTGTGC ATCATTGAAG AAGCCTGGTC ACTGCTCTCT
GGCGCCAACG CGCAAGCCCG TGAGTTCATT AATACCGGTT ATCGCACCGC TCGAAAGTTT
GGCGGCTCGT TTTGCACCGT GACCCAAGGC ATTACGGACT TCTTTGCCAA CGCCGAAGCC
ATGGCCTGTT ACAACAACTC CGACATTCAC ATCACCCTAC GCCAAGGCGA AGGGTTCACA
AGCTTTCTGC AAGACAACCC TGATACGTTC AGCCCTTATG AGCAACAAGT CGTCAAAGGG
TTTGAGAAGT CAGGCGTCGC AGGCTACAGC TGCGCGATGA TAAAAGCCGG TGGCCACGCG
TCGTTTCATC GGCTCTTTAC CGATCCCTTT ACCCGTGCGT GCCTCTCCAC TGAGCCCAAT
GAATTTGAGT TTTGTGAAAC CCTAATGAGC AACGGCACTG AACTCATGGA CGCCATTGAG
CAAACCGCTG AACACTTCTA TGGCGATGAA ATGCAAAAAT TTGATGCGAT GCTTCAAGGA
GCAAAACAAT GA
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| Protein sequence | MSLTLLKKHS KTEHNHLHHQ LPYRFFDDEH TLFHNTTSIG FGFQLNVLGG ANDSAIEALN
KILTTLPQGK QWDYQFTLTS NHQVSHLIEQ NTALMSKRGG ICARLANNER TYADFASTSG
FLHRQKHHFT LREHHSFLFV STTSRDIDKI NDTKATLYTS LTQLGLTLTP IGVPELISYV
DGHLNFNANK TRPEKATYNE HEPLHTQMLS PDSEFLVSRG HVDSRHTDNK HGEQTSRVIN
FGLLRLPSDF RLYALPECFS SLKNVAQSIN CPFTCSVQFQ IEDNGKATAD NDGHISALMK
TVGSKMQVLV PTAKDELAER KQIQLGLLSK EFTMVSMVMN LSLFSSKEKQ RDDSQAAVSA
FSSGGIDIAP LNMLQGHAYL SSLPFMMSEG FWKDSKRAGR IRTMKSSNAV NFFPIIHDNK
NFSGGMLLPT MRQQISFFDP FNCGSDNYNI ALTGGSGAGK SFFVQLLAKS VYSKFGKVWI
LDKGASYKKL TLMLEGTYMT SKEIFLNPFT HLGKIKAKSE HEASVDDELN PLAEVLDNIT
ALFATMASPR EELDPFQTAV LGDAILNAWN DKGPLTRVDD VQAALFAIST ESDNDRRISD
IATQLNKYCS NNVYGDTFNK PSMLNPNIHI TTLELDGFPE AVLRPAIFAL MVSINQQMYL
TGSRSTPKLC IIEEAWSLLS GANAQAREFI NTGYRTARKF GGSFCTVTQG ITDFFANAEA
MACYNNSDIH ITLRQGEGFT SFLQDNPDTF SPYEQQVVKG FEKSGVAGYS CAMIKAGGHA
SFHRLFTDPF TRACLSTEPN EFEFCETLMS NGTELMDAIE QTAEHFYGDE MQKFDAMLQG
AKQ
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