| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0056 |
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| Symbol | |
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| ID | 6961543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 79067 |
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| End bp | 80395 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643381385 |
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| Product | putative type I secretion protein, HlyD family |
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| Protein accession | YP_002264427 |
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| Protein GI | 209808889 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAATT TAGATAAAAT TATAGAACGA TCCATCAACA ACACTCATAT CGAGCGATTT
AACAATACGG AAGATGGTGA AAAAAAAGTC TCTACTCATA AGATTTTTAT CGTTATTGTC
GTATTCACTC TGTTTCTGTT GGTTTGGTCT TCTCAAGCCA CTATTGATAT TACTGTCTCA
ACACGGGGTG AAGCGCTTCT CGATTCTGAT GTCGAAAAAG TACAACATCT TGAAGGCGGG
ATTTTAAACG AAGTTTATGT CTCTCCTGGC GACTTGGTTT TTAAAGGCCA AAAAATCGCC
TTATTGACTT CCAAAGACCG TGTATCCGAA TTAAGTTCAA CGCAATACGA GATCACTGGA
TTGCAAATCG AGCAACAAAA ATACAATGCC CTAATCAGTA ACAGCACACC TAATTTTACC
GCTTATATTA ATTTTCCAGA GCTGGTCGAA ACTCATTCTT TGTCGTGGGA AGAAGAAAGT
AATCGTAATC GCTCTAGCGA TGAATTGATC TTGCATGACA TCAAACACAA ACAAAGTTTA
ATTGCATCAA TGCAACGCCG TGTAAAATCA TCAAACTCTC AATTAGGACT GATCAAGCAG
CAGCTTAAAA TTAAGCAACA ACTGTTTGAT GAAGAAATGG CCTCTTATGT CGATGTACTT
AACATGAAAG TTCAGCACAT GAACATGGTG AGAGAAATTG AGAATTTACG CGAAGGAATT
TTAAACGAAG AGTTTCAATT AGTTCGCCTT GAAAAATTGC TTGATGACAC ACAAAAAACA
CGTAGCACAG AGTATTACGC CAAGCTGACT GAAGTGAACA AACAACTCAA AATCAAACTG
ACTCAATTAC CAACCATCAG TGATAAAGTT GATCGTTTAT TGGTTTTCTC TCCTGTTGAC
GGCACTGTTG ATAAAGTTAA CTATAACTAT TTATCCGCCA TCATTTCTCC TGGTGACAGT
ATTGCCGACA TTACCCCATT AAAAAACACA CTTCATGCTG AAGTCAAAAT CCCTCGTAAA
GACGTTGGGT TTATCGAAAA AGGGCAAGAA GTAAAACTGA AATTTGATGC TTATAATTTC
GCTAAATATG GCGTGATCAC CGGCAGTATT TCTTCTATTT CACGCAGTTC TTATGAAGAA
AAAGAAGAAG AATATTACCT CGCCAAAATA GACATCACTC AGAACTATTT AGAGCGTAAT
GGCATTAAAT ATCATATCTC CCCTTATATG GAATTCACGG CTGACATCAA AACTGGTAAC
CGAAAAATTA TCGATTACGC ATTGAAACCC GTAATGGCCG CACTAGATGA ATCTTTTGAT
GAAAGGTAA
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| Protein sequence | MSNLDKIIER SINNTHIERF NNTEDGEKKV STHKIFIVIV VFTLFLLVWS SQATIDITVS
TRGEALLDSD VEKVQHLEGG ILNEVYVSPG DLVFKGQKIA LLTSKDRVSE LSSTQYEITG
LQIEQQKYNA LISNSTPNFT AYINFPELVE THSLSWEEES NRNRSSDELI LHDIKHKQSL
IASMQRRVKS SNSQLGLIKQ QLKIKQQLFD EEMASYVDVL NMKVQHMNMV REIENLREGI
LNEEFQLVRL EKLLDDTQKT RSTEYYAKLT EVNKQLKIKL TQLPTISDKV DRLLVFSPVD
GTVDKVNYNY LSAIISPGDS IADITPLKNT LHAEVKIPRK DVGFIEKGQE VKLKFDAYNF
AKYGVITGSI SSISRSSYEE KEEEYYLAKI DITQNYLERN GIKYHISPYM EFTADIKTGN
RKIIDYALKP VMAALDESFD ER
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