| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06545 |
|---|
| Symbol | |
|---|
| ID | 5556944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 1698679 |
|---|
| End bp | 1701837 |
|---|
| Gene Length | 3159 bp |
|---|
| Protein Length | 1052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640911018 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001448663 |
|---|
| Protein GI | 156977757 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGA ATCAACAAAA GGGCATCATT GCCTATTTTG CCAATAACTC TGTCGCCGCG
AACCTAATGA TGGTGTTCAT CATCGTGATG GGTATCGTGA GCTTCATGTT CATTCAACGA
CAAATGTTCC CGAACGTTGA AGTTAACTAC ATCAACATTC GAGCGGCTTA TCCAGGAGCC
TCTCCGCAAG AGATTGAAGA GAGTATCTTA GTTAAAGTTG AAGAATCGAT CAAAGACGTC
ACCGGCATCA AAAAGACTGT GGCACGAGCT TCTCGAGGCA GCGCTTATGT ATCGATAGAA
GTGGATGTGA ATGCTGACAT CAAACGCGTA TTGGACGATG TAAAGCAACG GGTAGACACC
TTATCCAATT TGCCGGCAGG CATGGAACCC ATCAACGTTT ATCAGGTGGA ATGGCGACAA
GAGGTGATAG AAATGGGCTT GGTGGGCGAT AGACCACTGG AAGAGCTCAA ACCTATTGCG
AAACAAGTCG AAGACGAATT ACTGCAACTG AAAAATGTCA TGCTGGTGGA TCTCAATGCA
CCAGAAGAAG AGATTGCTAT CGAAGTTGAT CCGCTGATTC TTCGTAAATA TGACTTAACG
CTAAGTGATG TGAGCAACGC GATTCGTCGT TACTCAGCGA ACTTTTCTGC AGGTGAAGTA
AAAACCAACG CAGGCATGAT CGCAGTTCGT ATTGAAAACC AGTACTACCG TGGTGATGAG
TTCCGCAATA TCCCTGTTAA GCTTGGCGCA AACGGTGCAA AAGTTCTGCT ACAAGACATC
GCAACGATTA AAGACGGCTT CACAGAAGAA GACCGTTACT TTGAATACTC GGGTCAAAAC
GCGATCTACA TGGCGGTTCA AGCCACGCGT GATCAAAACA TCATCCCAGT TGCTGAATCC
GTTCGTAACT ACATCGAAGC AAAGAACAAA ACCTTACCTG ATGACATTCA ACTGAAAGTT
CTCGTTGATA TGACCTACTA CTTAAATGGT CGTCTCGACA TGATGTTGAA GAACCTTCTT
CAAGGTGCCG CTTTGGTTGC CATCATGCTC TCGGTATTCC TTCGTTTCCG CTTAGCAATG
TGGGTAATGT TGGGGCTACC AGTGTGTTTC TTAGGCGCAG TAATGATGAT GCCAATGCTG
GGTATCACTG TGAATATTGT GTCTTTGTTC GCCTTTATCA TGGTACTCGG TATCGTGGTG
GATGACGCAA TCGTAACCGG GGAAAGTGCA TACAGTGAAA TCGAAGAGAA GGGCGGTGGT
GTTGAGAACG TAGTGACGGG TGTTAAGCGT GTCGCGACTC CGGCGACCTT TGGTGTGTTA
ACCACGATAG CGGTGTTTGC TCCATTCCTA CTCTCAAGTG GGATCGATAG TGCCTTCTTC
TACGGCATTG CAGGTGTTGT GATCCTGTGT CTTATCTTTA GCTTGATTGA ATCTAAGCTG
ATCTTGCCAG CTCACTTAGC CCACACCAAC TTTACGCCAA TCAAAGCGGG CGGTTGGCGT
GATAATTTCA ACAAGCGCTT CTTCGGCTTT GTTAATGGTC CTTATCGCAG CTTTGTTAAA
GCTTGTACTC ATTGGCGTTG GACCGTATTT GCCTTCTTCT GTGGTCTGTT GTTGATCAGT
GCTGCTTTGG TTAGCTCAAA CTACGTGCGT GTGATTCCAA ATCCAAAAGT ACCAACGGAT
TATCCAGCGA TTACTATTGA GATGAATGAC ACGGTATCGA GCGAGCAAAC CATCAATGCG
TTAAAAACCA TTGAAGGCGT GATGCAGAAA ATCGAAAACC AGATCATTGA TGAGCATGGT
CAGGGGATGA TTCGGGATGT GCTTTCTTAC AACCGCAGCC GTACTGAAGG TCGTATTCTT
GTGCCGCTTG TGGATGAAGA GTTGCGTCCA TTCAATACCT TTGAACTTGC ACGTCGCTGG
CGTGAGGCAA TGCCAGTTAT TCCGGGCATG AAGAGCTTTA AGATCCGCGA GCAAAGTGCA
GGTGGCGGTG ACCGCGACGA GTTTGGTTAC TTGCTGTTTG GTTCGGACAT TAACGAGCTA
AACGAAGCAG GTCGCTACCT GATTGGTCGA CTTCAGCAAG AGGAAGGTCT GTACGATATC
TCTTCCTCTA TCGATTCTGG TAGTAAAGAG GTACTGCTAT CACTAGCTCC TGTTGCTTAT
GATTTGGGCT TGGACCTCAC CATGATCGCA GAGCAAGTAG GTGGCAGTTT CTACGGTGGT
GAAGCGCAGC GCATTATTCG TGATGGCGAA GAAATTAAGG TCATGGTGCG TTACCCGCAA
CTGACGCGTG AAGCCTTCTC ATCACTACGT TACGCTGTGA TTACCACGCC AGCAGGCAAG
AAGGTCATGC TTGGCGATGT GGTGAATATC AACGAGCAAC CGGGTGTGAG TACCATTCGA
CGTGAAGGCG GTTATCAAAC CGTTTATGTC TATGGCTCTA TAGATGAAGA GTTGGTTGAA
CCTCAAGAAG TGGTGAAAGT TATCGACGAC AACATCTTAC CGGACATGAA GCAAGCCTTC
CCAAGTGTGA AAACGGAATT GGGTGGTGAC ATCGAAGAGC AAGCAGCGCA GCGTAACGAG
CAAATCATGT TCTTCATTGC AGGCATGATC ATCGTATATA TCTTGCTGGC CGTGCCGCTT
AAGAGCTACA CCCAACCGCT GATCGTCATG TCGGTGATTC CGTTTAGCTT AACGGGGGCG
ATTTGGGGAC ACTTCTGGCT GGATATGGAC ATCAGCATGA TGTCGACATT TGGTTTAATT
GCAGCAGCGG GTGTGGTTAT CAACGATTCC TTGGTGATGA CAGATTACGT TAACCAAGTG
CGAGAAAAAG GCATGAGCAT TAAGCAGGCG GTTGTTGAAG CTGGCTGTGC ACGTTTTCGA
GCGATCACCT TGACGTCAAT CACTACCTTT GCTGGTGTAC TTCCAATCAT GTTTGAAACC
AGCTTGCAGG CGCGTTTTGT TATCCCGATG GCAGTAGCGC TCGGTTTTGC CGTTCTATTT
GCAACTGTCC TTACTTTGAT TCTGGTGCCT TGCTTATACC TGATGTTAGA GGATATTAAA
AACATCTTCC GCATTGTTAA ACGGTTCTTT GGTCGTTTGA TAGGTAAGTT CAAATCACAG
TCATCAAACA CTGTCGGCAA CGAAAGCACA CAAAGCTAG
|
|---|
| Protein sequence | MEENQQKGII AYFANNSVAA NLMMVFIIVM GIVSFMFIQR QMFPNVEVNY INIRAAYPGA
SPQEIEESIL VKVEESIKDV TGIKKTVARA SRGSAYVSIE VDVNADIKRV LDDVKQRVDT
LSNLPAGMEP INVYQVEWRQ EVIEMGLVGD RPLEELKPIA KQVEDELLQL KNVMLVDLNA
PEEEIAIEVD PLILRKYDLT LSDVSNAIRR YSANFSAGEV KTNAGMIAVR IENQYYRGDE
FRNIPVKLGA NGAKVLLQDI ATIKDGFTEE DRYFEYSGQN AIYMAVQATR DQNIIPVAES
VRNYIEAKNK TLPDDIQLKV LVDMTYYLNG RLDMMLKNLL QGAALVAIML SVFLRFRLAM
WVMLGLPVCF LGAVMMMPML GITVNIVSLF AFIMVLGIVV DDAIVTGESA YSEIEEKGGG
VENVVTGVKR VATPATFGVL TTIAVFAPFL LSSGIDSAFF YGIAGVVILC LIFSLIESKL
ILPAHLAHTN FTPIKAGGWR DNFNKRFFGF VNGPYRSFVK ACTHWRWTVF AFFCGLLLIS
AALVSSNYVR VIPNPKVPTD YPAITIEMND TVSSEQTINA LKTIEGVMQK IENQIIDEHG
QGMIRDVLSY NRSRTEGRIL VPLVDEELRP FNTFELARRW REAMPVIPGM KSFKIREQSA
GGGDRDEFGY LLFGSDINEL NEAGRYLIGR LQQEEGLYDI SSSIDSGSKE VLLSLAPVAY
DLGLDLTMIA EQVGGSFYGG EAQRIIRDGE EIKVMVRYPQ LTREAFSSLR YAVITTPAGK
KVMLGDVVNI NEQPGVSTIR REGGYQTVYV YGSIDEELVE PQEVVKVIDD NILPDMKQAF
PSVKTELGGD IEEQAAQRNE QIMFFIAGMI IVYILLAVPL KSYTQPLIVM SVIPFSLTGA
IWGHFWLDMD ISMMSTFGLI AAAGVVINDS LVMTDYVNQV REKGMSIKQA VVEAGCARFR
AITLTSITTF AGVLPIMFET SLQARFVIPM AVALGFAVLF ATVLTLILVP CLYLMLEDIK
NIFRIVKRFF GRLIGKFKSQ SSNTVGNEST QS
|
|---|
| |