Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_04973 |
Symbol | fliF |
ID | 5558783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | + |
Start bp | 228445 |
End bp | 230196 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640909452 |
Product | flagellar MS-ring protein |
Protein accession | YP_001447108 |
Protein GI | 156976202 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGAAC TTTCCACTCA AGTGGCCGGT AATTCTGCAA TGCATGCCGG TACAACTCAG ACTCCTTCCT CAAATCGAGG GATGGATGAC GTAACCAATA AAATCAAGCA ATTGTGGTCG AGCAGCCAGC GTAACCTCGT ATTATCCGCG GTGTTAGCGG CCATTGTTGC GGCCATCATC GTGGTGGCGC TTTGGAGCTC TTCGCAAAGC TTCCGTCCGT TATACAGCCA ACAAGAGCGT TTTGATATCG GCGAAATTGT GTCGGTATTA GAAAGCGAAG GCATTAGCTA CCGCATGCAA GAGCAAAACG GCCAAGTATT GGTTCCAGAA GGTGAAGTTG CCCGCATCCG CATGCTGCTT GCTTCGAAAG GGGTGAAAGC GAAATTGCCA ACGGGTCTGG ACTCATTAAA AGAAGACAGC TCGCTAGGTA CCAGCCAGTT TATGGAAACG GCACGTTATC GTCACGGTTT AGAAGGTGAG TTAGTGCGCA CTATCATGTC GCTAAATGCA GTAGCGAATG CTCGCGTCCA TCTTGCGATT CCTCGCCAAA CCTTGTTTGT GCGCCAAAAC ACGGAAAACC CATCGGCTTC TGTGATGTTA GAGCTTAAGC CGGGCGAAGA TCTTAAGCCT GAGCAGGTCG AAGCTATCAT CAACCTGGTG GTTGGCAGCG TGACAGCAAT GAAGCCTGAA TTTGTCTCGG TCATTGACCA ATACGGTCGA CTATTGAGTG CGGATGTGGC TTCTGCTGAA GCGGGCAAAG TGAACGCGAA ATATCTTGAA TACCAAAAGA GCGTTGAGAA GCAAATCATC CAACGCGCGG CTGACATGCT AACGCCAATC GTAGGGCCAA GTAACTTCCG CGTACAAGTT GCGGCGGATA TGAACTTTAG CCAAGTCGAA GAGACACAAG AGATCCTCGA CAACGCACCA GTCGTTCGTA ATGAACACAC TATTCAAAAC AACTCCGTTG ACCAAATCGC GTTGGGCATT CCTGGCTCGT TAAGTAACCA ACCTCCCGTA ACTGGTGAAA CGCCAACCAA CGATAGCCAG AACACCAATG CACGTTCAGA AGTGAATCGC CAATATGCGG TAGGCAGCAG TGTGCGTCGA ACTCAGTACC AACAAGGTCA AGTTGAAAAG CTCAGCGTGT CAGTTCTGCT TAACTCGCAA GCCGCACCAG ATGGTGTCGC GTGGAGTGAA GCGGATAAAT CGCAAATCTC AACCATGATC ATGGACGCTG TGGGTATCTC GAATGCGCGT GGCGACAGCT TGAGCTTGAT GAGCTTTAAC TTCACCCCAA TCGAGATCGA CGCGCCGCCA GCATTGCCTT GGTGGCAAGA CCCAACGGTG CAGCAACCAT TGCGTTACGT GATTGGCGGT GTGTTAGGTC TAGCGATGAT CTTCTTTGTG CTGCGCCCGT TGATCATGCA TTTAACGGGA GCGGATAAGC CTGCTCAAGA ACTTGAATTT GCTGAGCCAC AAGAAGAACC GCAATACGAT AACCTCCAGA CTCGTGAAGA GCGTGAGCGC GAAGAGGTGC TCAACCGCAA ACTGTCGGAG AAAGGCATTG CCGTATCGTC CGGCTTGGAT GTGAACAGCG ACATGCTGCC GCCAGCGGGT TCTCCACTAG AGATTCAATT GAAACACCTA CAGCTTATTG CTAACGAAGA GCCAGAGCGT GTAGCCGAAA TTCTGAAACA ATGGGTAAAC ATCAATGAAC ACAGCACAGT CGACGTCAAA GCAGACGCAT AG
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Protein sequence | MSELSTQVAG NSAMHAGTTQ TPSSNRGMDD VTNKIKQLWS SSQRNLVLSA VLAAIVAAII VVALWSSSQS FRPLYSQQER FDIGEIVSVL ESEGISYRMQ EQNGQVLVPE GEVARIRMLL ASKGVKAKLP TGLDSLKEDS SLGTSQFMET ARYRHGLEGE LVRTIMSLNA VANARVHLAI PRQTLFVRQN TENPSASVML ELKPGEDLKP EQVEAIINLV VGSVTAMKPE FVSVIDQYGR LLSADVASAE AGKVNAKYLE YQKSVEKQII QRAADMLTPI VGPSNFRVQV AADMNFSQVE ETQEILDNAP VVRNEHTIQN NSVDQIALGI PGSLSNQPPV TGETPTNDSQ NTNARSEVNR QYAVGSSVRR TQYQQGQVEK LSVSVLLNSQ AAPDGVAWSE ADKSQISTMI MDAVGISNAR GDSLSLMSFN FTPIEIDAPP ALPWWQDPTV QQPLRYVIGG VLGLAMIFFV LRPLIMHLTG ADKPAQELEF AEPQEEPQYD NLQTREERER EEVLNRKLSE KGIAVSSGLD VNSDMLPPAG SPLEIQLKHL QLIANEEPER VAEILKQWVN INEHSTVDVK ADA
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