Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003359 |
Symbol | |
ID | 8557092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 1917678 |
End bp | 1918733 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646406454 |
Product | type III secretion inner membrane protein HrpY |
Protein accession | YP_003285984 |
Protein GI | 262394130 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4792] Type III secretory pathway, component EscU |
TIGRFAM ID | [TIGR00328] flagellar biosynthetic protein FlhB [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCAG AAAAAACAGA GCAACCCACC GCAAAAAAGT TACGCGATGC CAGGCAGAAA GGTCAGGTAG CCAAAAGCCA AGAAATCGTA TCGTCTGCAT TAATTTTGGC GCTCATAATT GTACTGTTTG CGTTCGCCGA TTATTACATG TCGCACATCT CAGCGCTTAT TCTCCTACCA AGTAAGCTTG CTTATCAGGG CTTCCAAGAT GCGCTAGTCG ATGTCGCTAT TGCCATCGCA AAAGAAATTG CCTATCTACT CGCCCCGATT ATTCTGGTTG CTGCACTCGT CGCCATCTTT TCCAATATGG GGCAGTTCGG CTTCCTATTT AGTGGTGAAT CCGTTAAACC CGACATCAAA AAGATCAATC CCGTCGAAGG TGCCAAACGC ATTTTTTCGC TTAAGAGTGT GATTGAGTTT ATCAAGTCGA TCCTTAAAGT CTCTCTTCTT TCCTGCATTA TCTGGTTGAC CTTACGCGGT AACATCAACG CTTTGATGCA AATTCCAACT TGCGGGCTAG AATGTGTCCC GACCATTACT GGCGTCATGA TTAAACAATT AATGATTATC TCTTCGGTAG GTTTCATCGT CATCGCTGCA GCTGATTTTG CGTACCAAAA ATTTGACCAC ACGAAGAAAC TCAAAATGAG CAAGGACGAA GTGAAGCGCG AATACAAAGA GATGGAAGGC AGCCCAGAAA TCAAAAGTAA ACGTCGTCAG CTACACCAAG AGCTACAGGC CTCCAATCAA CGTGAAAATG TTAAACGCTC CAATGTGTTG GTAACAAACC CAACGCATAT TGCGGTTGGT CTGTACTACA AAAAAGGCGA AACGCCCCTA CCCGTCATCA CCTTGATGGA AACCGATGCG GTAGCCAAAC GTATGATCGC AATCGCCAAA GAGGAAGGTG TGCCTGTGAT GCAAAAAGTC CCTCTTGCTC GCGCACTATA CGCGGACGGC AACGTCGACC AGTACATCCC AAGCGATCTT ATTGAGGCAA CCGCCGAAGT GCTTCGTTGG CTGGCATCAT TGGAGTCGGA TAAGACGCTG AACTAA
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Protein sequence | MSAEKTEQPT AKKLRDARQK GQVAKSQEIV SSALILALII VLFAFADYYM SHISALILLP SKLAYQGFQD ALVDVAIAIA KEIAYLLAPI ILVAALVAIF SNMGQFGFLF SGESVKPDIK KINPVEGAKR IFSLKSVIEF IKSILKVSLL SCIIWLTLRG NINALMQIPT CGLECVPTIT GVMIKQLMII SSVGFIVIAA ADFAYQKFDH TKKLKMSKDE VKREYKEMEG SPEIKSKRRQ LHQELQASNQ RENVKRSNVL VTNPTHIAVG LYYKKGETPL PVITLMETDA VAKRMIAIAK EEGVPVMQKV PLARALYADG NVDQYIPSDL IEATAEVLRW LASLESDKTL N
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