12 homologs were found in PanDaTox collection
for query gene VEA_003340 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013456  VEA_003340  type III secretion cytoplasmic protein (YscF)  100 
 
 		 82 aa  164  5e-40  Vibrio sp. Ex25  Bacteria  normal  0.786644  n/a   
 
 
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NC_009783  VIBHAR_01703  hypothetical protein  87.8 
 
 		 82 aa  143  8.000000000000001e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
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NC_008463  PA14_42310  type III export protein PscF  58.9 
 
 		 85 aa  85.1  3e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
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NC_010157  YpAngola_B0057  type III secretion apparatus needle protein YscF  48.15 
 
 		 87 aa  80.9  0.000000000000006  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
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NC_011149  SeAg_B2995  type III secretion apparatus needle protein  33.78 
 
 		 80 aa  45.8  0.0002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00251179  n/a   
 
 
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NC_011353  ECH74115_4133  type III secretion apparatus needle protein  31.34 
 
 		 79 aa  44.3  0.0005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  hitchhiker  0.00116723 
 
 
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NC_011080  SNSL254_A3078  type III secretion apparatus needle protein  31.88 
 
 		 80 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  hitchhiker  0.000627693 
 
 
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NC_011083  SeHA_C3062  type III secretion apparatus needle protein  31.88 
 
 		 80 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.58086  normal  0.170696 
 
 
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NC_011094  SeSA_A3026  type III secretion apparatus needle protein  31.88 
 
 		 80 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.504862  hitchhiker  0.00772471 
 
 
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NC_011205  SeD_A3183  type III secretion apparatus needle protein  31.88 
 
 		 80 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.587699 
 
 
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NC_009800  EcHS_A3010  type III secretion apparatus needle protein  31.34 
 
 		 71 aa  42.7  0.002  Escherichia coli HS  Bacteria  hitchhiker  0.00000110962  n/a   
 
 
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NC_010468  EcolC_0852  type III secretion system needle protein  31.34 
 
 		 71 aa  42.7  0.002  Escherichia coli ATCC 8739  Bacteria  normal  0.165297  normal  1 
 
 
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