Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_001064 |
Symbol | |
ID | 8559377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | - |
Start bp | 1205620 |
End bp | 1206825 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 646408735 |
Product | vibrioferrin membrane-spanning transport protein PvsC |
Protein accession | YP_003288214 |
Protein GI | 262396361 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCAAAC TCATCTACAG TGTGTTGTTG TGCCACTTTA TCGCTGCGTT TGCCGCGTTA GGTATGCCGC TATTTCTACC CGTCGTGTTG CCAACGTTAG GCGCAAGCAT TGATGCGGAC TGGGCAGGGG TATTGTTTAT CCTACCCACG TTTTGTACTG CGTTGGCGGC GCGATTTTGG GGCAGCTTTG CCGATCGCTA CGGTCGCCGC CGCTCACTCT TGCGTGCGCA ACTTGGCCTT GCAGCAGGGT TTGCGCTGTG CGGCTTGGCA GACAACCTCG CCATGTTTGT GTTTGGTCTT ATTGTTCAAG GAACCTTTGG CGGCACCATG GCCGCCTCGA ACAGCTACTT ATCTAGTCAA ATTAAAGAAG CCAAAACACT CAGCAAGTCA CTCAATAAAA CCCAACTATC TGCTCGCTTG GCGCTGATCG TTGCGCCCAT TGGGCTCGGC TGGAGCTTGT CAGAGACCAA CCCGCTCAAC GCATACCTGT GGTTATGCGT TTTGCCTTTA ATTGCTATGG GCATCACGCT AACACTGCCT GCGGATAAAC CCGCCGAACG AAACCTCGAA AAGCCAAACT CAGAATCTCA GCAAGAAAAA CCGGTTGCAC AGAAAAACGC AATGCATGCC ATTCGTTGGA TCTTCTTTGC TCAGTTCGGG TTTGCATTTT CCATGGTGGT GACCTTTCCT TATTTCTCGC CGTTTGTGCA GCAATATGGC ATCACTAACC ACGCATGGAT CGGTTTTTTG TACGCACTGC CGCATGGCTT CTATCTGTTG CTGGCAGGCA AAATCCACGT GTTGTCAGAT GGGCTGAATC GCCATCAACC GCTGCGCACG TTGTGGCTCG GGTTTGCATT GCTTGCCGTG AGCTCTGCCT TGCATTTGAT TGCGTCCGAA ACCGCACTCA TTGCTGCGAG AATTATCTTC GGCATCGCGA TGGTGTGTTG CTATCACGGA TTGCATCAGC ATCTTGCGAG CAATCTGGAT CGCAAACTCA GTGGCAAAGT ATTTTCTCGC TTTGATGCCA TGTCCAAATG GGGTGGCGTG GCGGCGGGAT TTTGCGCTTC TTTCATTTCT AGCTTGGGGC TACTTGAGGT TCCTTTCCTA CTTTCTACGA TAGTCAGCGT AATCACCTTG ATCGCGCTGG TTCTCCATTC AAAATTTGGA AATCAACATG TTACAAACTC AATCCTCTCA GACTAG
|
Protein sequence | MTKLIYSVLL CHFIAAFAAL GMPLFLPVVL PTLGASIDAD WAGVLFILPT FCTALAARFW GSFADRYGRR RSLLRAQLGL AAGFALCGLA DNLAMFVFGL IVQGTFGGTM AASNSYLSSQ IKEAKTLSKS LNKTQLSARL ALIVAPIGLG WSLSETNPLN AYLWLCVLPL IAMGITLTLP ADKPAERNLE KPNSESQQEK PVAQKNAMHA IRWIFFAQFG FAFSMVVTFP YFSPFVQQYG ITNHAWIGFL YALPHGFYLL LAGKIHVLSD GLNRHQPLRT LWLGFALLAV SSALHLIASE TALIAARIIF GIAMVCCYHG LHQHLASNLD RKLSGKVFSR FDAMSKWGGV AAGFCASFIS SLGLLEVPFL LSTIVSVITL IALVLHSKFG NQHVTNSILS D
|
| |