| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000302 |
|---|
| Symbol | |
|---|
| ID | 8558607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 325550 |
|---|
| End bp | 326455 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646407967 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_003287455 |
|---|
| Protein GI | 262395602 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA CCGATCTTAA TCTTATCCCC ATCTTTATTG CCATTTATGA AGAGGGGAAC
TTATCTAAAG CGGCAGCACG TCTTAGTATC ACGCAGCCCG CAGTCAGCAA AGCGTTGGCA
CGCCTTCGTG ATATTTATGA CGAACCTTTA TTTCATCGCT GTACCAAGGG GGTAGAACCT
ACCTCTTTTG CAATGGATAT TTACCCTGCG CTGCTTACTT CGGTGCAAAA CTTTACTTCA
ACTCTGACGG CTTCTAGCGA ATTTGACCCT AAAGTGTCGA ATCGAGTGTT TTCCATTGCT
TGTGTCTCTG TTGCAAGTTT TGAGTTGCTC CCTCAAGTTA TGAAACAGAT CCGTGAGTTA
GCACCACATA TTGCTTTAGA GGTTCATCCA CTCTTTACGG AAGATTTTGA AAGCGATCTG
CGTTTGCAAC GTTACGACTT GATCATTGAT ATCGCGCCAA GAGCAAGAAC AGTTTTAAAA
GTTGAAACTG TACTTACTGA GCGCTTGGTG GTGGTGTGTA GCGAGGAGCA CCCACGCTTA
AAGAACGAGA TTACGGCTGA ACAATTTTTT GAAGAAGAAC ATGTGGTGGT TTCGCAGTGG
CAGAGTCGTA AGAGCTTGTT AAACGCCGAT GATATTGTCG ACTTGGACAA AAGAAAGATA
AAGTATCGAG CTTCTGGCGT GTTGGAAATG CTACCTGTTA TCTGTGGTAG TGAATATATT
GGTTTAATGC CCGAGTCGAT GATCAACTTG TTCAACAACA CCTATCATGT TAAATCTTTA
TTTATGCCAT TTGATGAACA AACCTATGAG CTCTGCACAA TATGGCATCC TAGTCGGACA
AACGACAGTG CCCATCAATG GTTGCGATCA CAGATTAAAC GAGCAGGGAA AACCATCAAC
CAATAG
|
|---|
| Protein sequence | MKPTDLNLIP IFIAIYEEGN LSKAAARLSI TQPAVSKALA RLRDIYDEPL FHRCTKGVEP
TSFAMDIYPA LLTSVQNFTS TLTASSEFDP KVSNRVFSIA CVSVASFELL PQVMKQIREL
APHIALEVHP LFTEDFESDL RLQRYDLIID IAPRARTVLK VETVLTERLV VVCSEEHPRL
KNEITAEQFF EEEHVVVSQW QSRKSLLNAD DIVDLDKRKI KYRASGVLEM LPVICGSEYI
GLMPESMINL FNNTYHVKSL FMPFDEQTYE LCTIWHPSRT NDSAHQWLRS QIKRAGKTIN
Q
|
|---|
| |