Gene VC0395_A2119 details

Gene Information

• Locus tag: VC0395_A2119
• Symbol: tbpA
• ID: 5136736
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2274514
• End bp: 2275506
• Gene Length: 993 bp
• Protein Length: 330 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640533575
• Product: thiamine transporter substrate binding subunit
• Protein accession: YP_001218035
• Protein GI: 147675627
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4143] ABC-type thiamine transport system, periplasmic component
• TIGRFAM ID: [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily; [TIGR01276] thiamine ABC transporter, periplasmic binding protein

Plasmid Coverage information

• Num covering plasmid clones: 60
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAATTTC AACTGACTGC GGTTGCGTTA GCAACCCTAT GTGTTGCCTC AGCAGCGTCT 
GCTGCACCAA CCCTCACCGT TTACACTTAC GACTCTTTTG CCGCCGAATG GGGACCTGCA 
CCTGCGATTG AAAAAGCGTT TGAAGCACAA TGTGGCTGCG ATCTGCAATT TGTCGCTTTG 
GATGATGGCG TGTCGATTCT TAACCGTCTG CGTTTGGAAG GCAGCAACAG CAAAGCCGAT 
GTGGTGCTGG GGCTCGATAA CAACCTTATC GAAGAAGCCA AGCAAACCGG ATTATTGGCG 
ACCCACAGTG TGGATACCAG CAAGGTGACT CTGCCCAATG GCTGGAGTGA CAACACATTT 
GTGCCTTACG ACTATGGCTA TTTCGCTTTC GTCTATAACA AAGAGAAGCT GGCTAACCCG 
CCAACCAGCT TGAAAGAGCT GGTGGAAAAA CGTGATGATC TGAAAGTGAT CTACCAAGAC 
CCGCGCACTT CAACGCCGGG ACAAGGTTTA CTGCTGTGGA TGAAATCTGT CTATGGCGAC 
CAAGCGCCAC AAGCGTGGAA GCAGTTGGCG AGCAAAACGG TCACTGTGAC CAAAGGTTGG 
TCAGAAGCTT ACTCTATGTT TCTCGGTGGA GAGGCGGATC TGGTGCTCTC TTACACCACA 
TCGCCGGCCT ATCATTTGAT TGCAGAAAAT GATGCACGTT TTGCCACAGC GAATTTCAGC 
GAGGGGCATT ACCTGCAAGT GGAAGTGGCC GCCAAAGTCA AAAGCACTAA AAATGGCGAG 
CTGGCGGACA AGTTCCTGCA ATTTATCCTG AGTAATGAGT TCCAAAGCGT GATCCCAACG 
GGTAACTGGA TGTATCCAGT GACGGCGGTT GAACTGCCAA AAGGGTTTGA TACTTTGGCG 
GTACCGACAC AATCTCTTTC TTTCAGCGCA CAGGAAGTCG CGCAAATGCG TAAGCCATGG 
ATTCGTGAGT GGCAGCAAGC GCTGAGCTTT TAA 

 

Protein sequence

MKFQLTAVAL ATLCVASAAS AAPTLTVYTY DSFAAEWGPA PAIEKAFEAQ CGCDLQFVAL 
DDGVSILNRL RLEGSNSKAD VVLGLDNNLI EEAKQTGLLA THSVDTSKVT LPNGWSDNTF 
VPYDYGYFAF VYNKEKLANP PTSLKELVEK RDDLKVIYQD PRTSTPGQGL LLWMKSVYGD 
QAPQAWKQLA SKTVTVTKGW SEAYSMFLGG EADLVLSYTT SPAYHLIAEN DARFATANFS 
EGHYLQVEVA AKVKSTKNGE LADKFLQFIL SNEFQSVIPT GNWMYPVTAV ELPKGFDTLA 
VPTQSLSFSA QEVAQMRKPW IREWQQALSF