| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0572 |
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| Symbol | |
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| ID | 5170437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 570383 |
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| End bp | 571861 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640563079 |
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| Product | bifunctional shikimate kinase/3-dehydroquinate synthase |
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| Protein accession | YP_001244169 |
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| Protein GI | 148269709 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000527304 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAATCT TCCTCGTTGG GATGATGGGT TCTGGAAAGA GTACGATCGG TAAAAGGGTT
TCCGAGGTGC TCGACCTTCA GTTCATAGAT ATGGACGAAG AGATAGAAAG AAGAGAGGGA
AGAAGAGTTC GAAGGATTTT CGAAGAAGAC GGTGAAGAGT ACTTCCGATT GAAAGAGAAA
GAACTTCTTA GGGAACTTGT GGAAAGAGAC AACGTGGTCG TGGCAACGGG TGGAGGTGTT
GTGATCGATC CAGAGAACAG GGAGCTTTTG AAGAAAGAGA AGACTCTCTT TCTCTACGCT
CCCCCTGAAG TGTTGATGGA AAGAGTAACA ACAGAGAACA GGCCTCTTCT GAGAGAAGGA
AAAGAGAGAA TACGAGAGAT CTGGGAAAGG AGAAAACAGT TCTACACGGA GTTTAGAGGG
ATCGACACCT CCAAGTTGAA CGAGTGGGAA ACAACCGCAC TCGTTGTGCT GGAGGCTCTG
GACGAGAAAG AAATCTCAAC GATAGAAAAA CCACACCTGG TGAAGATCAT CCTCGGTGGT
TTCAAGAGGG TGAGGAACGA AGAGCTGGTT TTCACCACGG AGAGGGTGGA GAAGATATAC
GGAAGGTACC TTCCAGAGAA TCGGCTTCTT TTTCCGGATG GAGAGGAAGT GAAGACGCTG
GAGCATGTCT CCAGAGCGTA CTACGAACTT GTGAGGATGG ACTTTCCCAG GGGAAAGACC
ATAGCGGGTG TCGGAGGAGG TGCTCTCACC GACTTCACTG GCTTTGTGGC GAGCACGTTC
AAAAGGGGAG TGGGACTTTC TTTCTATCCG ACAACACTTC TGGCTCAGGT GGACGCTTCC
GTTGGTGGAA AGAATGCCAT CGATTTCGCT GGAGTGAAAA ACGTCGTTGG GACTTTCAGA
ATGCCAGACT ACGTCATCAT AGATCCCACC GTCACGCTTT CGATGGATGA GGGCAGGTTC
GAAGAGGGAG TCGTGGAAGC CTTCAAGATG ACGATTCTAT CGGGTCGCGG GGTAGAACTC
TTCGATGAGC CGGAGAAGAT TGAGAAGAGA AATCTCAGAG TTCTCAGCGA GATGGTAAAA
ATCTCCGTCG AAGATAAAGC GAGGATAGTA ATGGAAGATC CCTACGACAT GGGTTTGAGA
CACGCCCTGA ATCTGGGACA CACGCTCGGT CATGTGTACG AGATGCTGGA AGGGGTACCT
CACGGTATAG CGGTAGCGTG GGGCATCGAA AAAGAGACGA TGTACCTGTA CAGAAAGGGA
ATAGTGCCTA AGGAAACCAT GAGATGGATC GTAGAAAAGG TCAAACAGAT CGTACCAATT
CCTGTTCCAT CCGTCGATGT TGAGAAAGCC AGAAATCTCA TTCTGAACGA CAAGAAGATC
CTGAAAGGTT CCAGAGTTAG GCTTCCTTAC GTGAAAGAAA TCGGAAAGAT CGAATTCTTA
GAGGTCGATC CGCTCGAACT TTTGGAGGTG GTAGATTGA
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| Protein sequence | MRIFLVGMMG SGKSTIGKRV SEVLDLQFID MDEEIERREG RRVRRIFEED GEEYFRLKEK
ELLRELVERD NVVVATGGGV VIDPENRELL KKEKTLFLYA PPEVLMERVT TENRPLLREG
KERIREIWER RKQFYTEFRG IDTSKLNEWE TTALVVLEAL DEKEISTIEK PHLVKIILGG
FKRVRNEELV FTTERVEKIY GRYLPENRLL FPDGEEVKTL EHVSRAYYEL VRMDFPRGKT
IAGVGGGALT DFTGFVASTF KRGVGLSFYP TTLLAQVDAS VGGKNAIDFA GVKNVVGTFR
MPDYVIIDPT VTLSMDEGRF EEGVVEAFKM TILSGRGVEL FDEPEKIEKR NLRVLSEMVK
ISVEDKARIV MEDPYDMGLR HALNLGHTLG HVYEMLEGVP HGIAVAWGIE KETMYLYRKG
IVPKETMRWI VEKVKQIVPI PVPSVDVEKA RNLILNDKKI LKGSRVRLPY VKEIGKIEFL
EVDPLELLEV VD
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