| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0485 |
|---|
| Symbol | |
|---|
| ID | 5171252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 478691 |
|---|
| End bp | 480550 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640562994 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001244085 |
|---|
| Protein GI | 148269625 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGA AACTTGTTTG GTTATCGTTT TTATTACTGA TATTCACGCT TGCTTTTTCT
CAAGTAGCCA ATGTGCCAAG GTCGGACTTA CTAATTGTTC AACACTCTCA CGGTAGAGTC
TCTGATCCTG CTAATTGCAA TATTTTCACG TCATCCTGGA GATATCCGGC CAGAGGGCTT
CATCAGTTGA TCGTTAGACC TCTTTGGATG GTTGATCCTG CGAAAATGGA AATTATCAAT
GTTCTTGCAG AAACTAGCCC TATTTACAAC GATGATTTCA CGGAAATGAC TGTTAAACTT
CGCAAAGGGA TATATTGGAG TGATGGAGTG GAATTCACTG CCGATGATGT TGTCTTCGGA
GTGAAATTAA CGATTCAAAA TGAAGGTATG TCTAACCACG TTCAACTCAA AGAATGGGTC
AAAGATGTCG AGGCAAAAGA TAAATACACT GTCGTTTTTA AGCTAAACAA ATCCAATCCT
AGATTCCATT ATTATTTTGT CGACAGATGG GGTTGCTGGA GACCATTCCC CAAACATATA
TTTGAGAAAG TAGAAGATCC CGTTAAATTC AATTTCTATC CACCTGTTGG AACGGGTCCT
TATGTTTTAA AATCCTATGA TCCAAATGGA TATTGGTTTT TGTATGAGAG AAGAGAAGAT
TGGGAAAGAA CACCAGATGG TATACTTTAT GGAATGCCAC AACCTCGCTA TGTGCTCTTC
CAGGCTTATG ATTCTCCTAG CCAAATGATT CTTGCCATGA GACAACACCA ACTGGACGTC
ACATATACAT TTTCTTTGGA AATGGTTAAA TCTTTTTTGA AAATACCTAC TGTTAGAGTC
TTCAGAAAAG ATTTCCCTTG GGGTGAAACA CTAGAACCAA CAGTTACAGG CATTACTCTG
AATACAATGC GCTATCCTTA CAACATTCGT GATGTAAGAT GGGCATTGGT ACTTGCTATA
AACATACTGG AAGTTGCAGA TCTAGTTGCT GATGGGGCTG TTAGATTTGC CCCATTACAT
GTGCCACCAG AACCTGTCTG TGAAAAGTAT TACTATACAG CCTTGAAAGA TTTCTTAGAG
AACTTCACAT TGCAAATTGA CGATCAGACG GTATTCAAAC CTTTTGATAC CACACTACCC
GATAAGCTGG CAGAAATGGC AAGGAAGAAG GGTTATAAAG TCTCCAAAGG TCAACTAGAA
GAGTTGTTTG GCATCGGTTG GTGGAGATAT GCTCCTGACG TAGCAGAAAA ATTACTGAAA
AAACATGGTT TCAAGAGAAA TGAACAGGGA CAGTGGTTGT TACCCAACGG AACCCCATGG
AAGATGGAAA TAATTGTTAA CCCAGACGCA AACAGGCCAG ACAATAGGGT ACCTGCAGCA
ATTGCGCAAC AGTGGAAAAA ATTTGGAATC CAAATTGAAA TAAGACCAAC TTCTGATTCT
ACTGTGCACG CTTATGGAGA ATTTGATGCG TGCAGTGCCT GGCCAGCAGT AGAAACATGG
GGAGGAGTAG CAGATATTTA TAGAACATTA TCTCCTTTCG CGAGCAGATA TCAGCGACCA
ATAGGCGAAT TCAACGCTGG TCATGCTTCC AGATGGTCTG ACCCTAGAAT GGATGAAATA
TTAGAAAAAA TGAAAAAAAC ATCTCCATTT GATCCAGAAA CAATAGAGTT AGGTAAAGAA
GGATTAAAAT TGTTAATTGA AGAAATGCCA AGCATTCCCG CTTTCCAACT GACATGGTTT
GTGATTTACG ATGAATACTA CTGGACAAAC TGGTCAACCG TGGAGAATAT CTACGTACAT
CCTGTCCATA CTTGGCCTAA TTTCGGTTTT GAATTGCCGT ATCTGAAAAG AACAAAATAA
|
|---|
| Protein sequence | MKRKLVWLSF LLLIFTLAFS QVANVPRSDL LIVQHSHGRV SDPANCNIFT SSWRYPARGL
HQLIVRPLWM VDPAKMEIIN VLAETSPIYN DDFTEMTVKL RKGIYWSDGV EFTADDVVFG
VKLTIQNEGM SNHVQLKEWV KDVEAKDKYT VVFKLNKSNP RFHYYFVDRW GCWRPFPKHI
FEKVEDPVKF NFYPPVGTGP YVLKSYDPNG YWFLYERRED WERTPDGILY GMPQPRYVLF
QAYDSPSQMI LAMRQHQLDV TYTFSLEMVK SFLKIPTVRV FRKDFPWGET LEPTVTGITL
NTMRYPYNIR DVRWALVLAI NILEVADLVA DGAVRFAPLH VPPEPVCEKY YYTALKDFLE
NFTLQIDDQT VFKPFDTTLP DKLAEMARKK GYKVSKGQLE ELFGIGWWRY APDVAEKLLK
KHGFKRNEQG QWLLPNGTPW KMEIIVNPDA NRPDNRVPAA IAQQWKKFGI QIEIRPTSDS
TVHAYGEFDA CSAWPAVETW GGVADIYRTL SPFASRYQRP IGEFNAGHAS RWSDPRMDEI
LEKMKKTSPF DPETIELGKE GLKLLIEEMP SIPAFQLTWF VIYDEYYWTN WSTVENIYVH
PVHTWPNFGF ELPYLKRTK
|
|---|
| |