Gene Tpen_1676 details

Gene Information

• Locus tag: Tpen_1676
• ID: 4600928
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 1622391
• End bp: 1624301
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 639774449
• Product: extracellular solute-binding protein
• Protein accession: YP_921074
• Protein GI: 119720579
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0747] ABC-type dipeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.24706
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGG CAAAAGTTGC ACCAATACTG GTACTAGTAG TTCTCGCGAC AATCGCCCCT 
GTTTTCGCAG CGCCCGAGAC TATACCCAGG GAGGAAGCCA TCTACGTCGG CGGCGGAATG 
TGGTCTCCAC CGAACAACTG GAACCCCCTA ATACCGTGGT CCGCTGTAAC GGGTACAATA 
GGGCTTGTCT ACGAAACATT GTATCTATAT AACCCTGCAA ACGGAACTTT CATTCCTTGG 
ATAGCCGATG GTCAACCCAG CTTCCAGGTA AGCGGTAATA CAGTGAGAAT AACAATTAAG 
CTAAAAGAGG CAAGATGGCA GGACGGGCAA CCGCTTACAA GCGAAGATGT TGCGTACACG 
TTCTACGAGT TTCCGAAGAA AAACACAGCC GTCTATTATT CTAGCATTCT AAACTACCTG 
CTGTCCGTTG AAACACCCGA CACCAGAACC GTAGTTTTTG TCTGCAATGC CACAACCGTA 
AACTACCCGC AGATCTACGA TTTCCTGAGA TCAGTCGCTA TAATCCCGAA ACATGTATGG 
GTTAACAAGG AAAAACCATT GGAAGATGCA AACTGGCCGC CCATAGGCTC CGGGATGTAC 
AAGGCTAGTA GCTACACGTC TGACCGCATG ATATGGGTTC GCGACGATAA CTGGTGGGGC 
ACGAAGTACT TCGGAACACC CGGTCCAAGG TATATCGTAT ACGTCATGGT ATCGAGTAAC 
GCTGTTGCTC TAGCGATGCT GGCTCGAGGA GAGCTGGACT GGAGCAACTA CTTCCTGCCA 
GGCTTCTCCA GTCTTGTACA ACAATACCCG TTCTTAGTAA CCTGGTATAA TAAGTCACCG 
TGGAACCTTC CTGCAAACGT TGCATTCCTC TTTGTGAACA CGAAAAAAAC GCCCATGGAT 
AACCCTACTT TCCGCAAAGC TCTCTACTAC GCTATAGACG TGGATAAAAT AATCAACACA 
GTATTTGAGG GGGGCGTTAT CAAAGCCTTA CCTATAGGCA TACTCGACAT ACCTGGATAC 
AAGCCTTTCA TCGACACAGA ACTTATATCT AGGTATGGGT ATAAGTACGA CCCCGAAAAA 
GCAAAGCAAT TGCTTGACAG CATAGGGATA AAGGACTATA ATGGAGACGG GTGGAGAGAG 
CTACCCGGAG GCAAGCCTTT AAAACTTACT ATAATTGTGC CGTATGGCTG GACTGATTGG 
ATGGAGGCAG CCAGACTTAT CGCAAGCGAT CTCCAGAGAG TAGGACTTTA CGTCGAGGCG 
CAGTTCCCGG ACTACTCGGC GTATAGCGAG GCATTGTACA AAGGAACATT TGACATGTTG 
ATAAACAACT TTGGCAGCTT TGCCTCTATA TCCCCCTGGG TTATCTACAA CTGGGCACTA 
TGGCCCGATG CCCCACCCGT AGGCGAATAC TCCTGGAGCG GGAACTTTGG CAGGTACTCT 
AATCCGAAGG TAACAGAGCT TTTGCACACA ATAGCGAATA CACCTCTCAG CGATGTTACC 
AAGCTGAAGC AACTCTACGG TCAACTTGAA CAAATATACC TAGACGAGAT GCCTTACATA 
CCATTATGGT ACAACGGCTA CTGGTTCATT GGCTCGAAGC TGTACTGGAC AGGATGGCCT 
AGCGCCGATA ACCCGTACGG CGTACCGGTG ACGTGGCCTG GGAGGTGGCA AGACGGCGGC 
TTATTGGTGC TCCTTAAACT CAGACCTGTG AAAACTCCCA CAACTACTCC AACAACTACA 
CCGACCACTC CAACTACTCC GACTACCCCC ACTGCTCCGA CGACGCCTAC CGCTCCAGCA 
CCAGACTACA CTCCGTACAT AGTGGCGCTA ATAGTGATAG TCGCTATACT TGCCGTAGCT 
TACATGTTCT TTGTACAGCG CAAAAAGAAG GAAGAAACCA AGCCTCAATA A 

 

Protein sequence

MKKAKVAPIL VLVVLATIAP VFAAPETIPR EEAIYVGGGM WSPPNNWNPL IPWSAVTGTI 
GLVYETLYLY NPANGTFIPW IADGQPSFQV SGNTVRITIK LKEARWQDGQ PLTSEDVAYT 
FYEFPKKNTA VYYSSILNYL LSVETPDTRT VVFVCNATTV NYPQIYDFLR SVAIIPKHVW 
VNKEKPLEDA NWPPIGSGMY KASSYTSDRM IWVRDDNWWG TKYFGTPGPR YIVYVMVSSN 
AVALAMLARG ELDWSNYFLP GFSSLVQQYP FLVTWYNKSP WNLPANVAFL FVNTKKTPMD 
NPTFRKALYY AIDVDKIINT VFEGGVIKAL PIGILDIPGY KPFIDTELIS RYGYKYDPEK 
AKQLLDSIGI KDYNGDGWRE LPGGKPLKLT IIVPYGWTDW MEAARLIASD LQRVGLYVEA 
QFPDYSAYSE ALYKGTFDML INNFGSFASI SPWVIYNWAL WPDAPPVGEY SWSGNFGRYS 
NPKVTELLHT IANTPLSDVT KLKQLYGQLE QIYLDEMPYI PLWYNGYWFI GSKLYWTGWP 
SADNPYGVPV TWPGRWQDGG LLVLLKLRPV KTPTTTPTTT PTTPTTPTTP TAPTTPTAPA 
PDYTPYIVAL IVIVAILAVA YMFFVQRKKK EETKPQ