Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1855 |
Symbol | |
ID | 5297528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | + |
Start bp | 1839275 |
End bp | 1841980 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 640770124 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001307075 |
Protein GI | 150021721 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAA TATTAATTCT TCCAAATGAA AAAGATTGCA ACATAGAAGG ATACTTATAT ATTCCTTCAT ATGATGTTTT CCCATTCGAA AAAATAAATA ATTCGTGGTT TGTTCGTTCA CAACGAATAT ATGCATTGTA CTTAGCTTTA AAAAATAATT TGAAAGCCAC AGCTACTTTA TATTCAATAA CTAGATATGT AATGCCTCCA GATATATTAA AAAAACACAT CTTCGAATTG AAAATTGGTG ATAAAATAAC ATCACCTGAA GTTTTGTTTT CAAATCTTGG TTATGAACGA GTATTTAATG TAACAGACGG TGGACAATTT TCCACTAGAG GAGATATAAT AGATTTCCTT GGCCCAAATC AAATACCAAC TAGAATTGAA CTCTTTGACA ATATCATTGA AGATATAAGA ACATTCGATA TTGCAACACA AAAAAGTATC AAAAAATTGG AATATGCAAT TATTTTGCCG GCCAAAGAAT ATATTGAACC TGTTTTACAC GAAACAATAT TGGGAGAGAA ATACAAAGGT ACATTTTTAG ATTACAACAT TACATTTGAG GTAGTAAATA AAGAAAAGGT AATAGAAGAA TATATAAAAA AAGAGAGAGA AATAAGGGAA TTAATAATTG ATCCTCAATT GAGAAAAAAA TATATAAATT TTTCTGGTAT TGATTATAAC AAGATTTTAG AAGTTTCAAA AGAAAAGATA TTAGAAAATA CTAAGAAAAG AAAAGAAAAA GCATCAGATG AGATAAACTC AATTCCAGTA ATTAGTCAAG AAGATTTTCA AATTGGCGAT TATGTAGTAC ATAAAGAATA TGGTATTGCA AAATTTTCTG GAATAACTAA AATTACTCAA AAAAATCTTG AAAGAGAGTT TTTAATTCTA CAATTCAAAG ATTCAAAGCT TTTTGTACCA ACTGATAGGT TAGACCTTGT TCAAAAATAT ATAGGCGCAA GTGAAACAGT TAAACTAGAT AACTTAAGAA AAAGTAATTG GATTAGGAAA GTAAATAAAG CAAAGAAAGA AATACAAAAT ACTGTAAAAG AACTTTTAAG ATTAAACGCA CTAAGAAAAA TGACAAAAGG TTTACCACTT CCTGGAGATC CAGAACTTGA AAAAGAATTT GCCAATACAT TTCCACATAT AGAAACAGAA GATCAACTAA AAGCCATCGA AGAAGTTAGT GAAGACCTTT CAGCCGATAA AAATATGGAT AGACTTATAG CAGGTGATGC TGGTTATGGA AAAACAGAAG TTGCAATGAG AGCGGCATTC AAAACCGTAG TCTCTGGAAA ACAAGTTGCA TTACTCGTTC CCACAACAGT TTTGGCAAGA CAACACTTTG AAAACTTTCA AAAAAGATTT AAAAAGTTTG GAATTAAAGT TGAATTATAC GACAACTCCC TTACACCAAA ACAAAAAGAA AATGTAAAAG AAAATGTAAA AAAAGGAATA ACGGACATTG TAATAGGAAC TCACGGAATC ATAGCATCAA TGAAATTTTC AGATCTAGGG TTATTAATTA TAGATGAAGA ACAAAAGTTT GGCGTACACC AAAAAGAATC GTTTAAAAAA ATTAGAGTAA ATATTAACAT ACTTTCAATG AGTGCAACCC CAATTCCAAG AACACTACAT ATGGCACTTA GTGGGATTAA AGATATGTCA ATTTTAAAAA CTCCTCCAAT TGGTAGAAAA AACATACAAG TTTTTGTTAG TAAATTTGAC GAAAGAATTG CAAGACAAGC CATTCTAAGA GAAGTAAATA GGGGAGGACA AGTTCTTTAT GTACACAATA GGGTAAATAC TATTAAAGAT GTTGCAGATA ATCTTAAAAA AATAGTACCA GAAGTAAAAA TTGAAATAGC TCACGGCCAA ATGTCTAAAA GAAAAATGGA AAAGATTATA AAAGAATTCT ACGATGGAAA CCTTGATGTA CTAGTTTCAA CTTCGATAAT TGAAAACGGC ATTGATATTC CAAATGCAAA TACACTAATT GTAGATGATT CACATAGATA CGGATTATCA CAACTTTATC AACTTAGGGG TAGAGTGGGT AGAAGTGAGA AAAGAGCATT CGCATATTTT TTCCATCCAT CAAAAATAAA TAAAACTGCA CAAGAAAGGC TTAAAGCAAT AAAAGAAATA ATGGGACCGG GCAGTGGACT ACAAATTGCT TTAAAAGATA TGGAAATTAG GGGAATTGGT AATATACTTG GACTAGAGCA ACATGGGTTT ATAAACGACA TAGGGCTTAA TTATTATCTA GAAATATTAA ACGAAGTTCT ATCCAACTTA GAAGGTAAAA TTGAACCAAA AATAAACACT GAATTAATCG GAATGAAAGG TTCAATAGTA ATTCCAGAAA ATTATGTTAG TGATCCTGTT GAAAGGTTAA GACTATACAG AAGAATATCC TCGCTTTCAA CCGAAAAAGA AGTTGATGAA ATACTAAATG AACTTGAAGA TAGGTTTGGA ACTCCTCCAG AAAGTGTTAT TAATCTCCTA AAATATACAA AATTAAGGAT TTTATCATCA AAAATGGGAA TTTCAAAAGT TATTTTCAAC GAAAACTCAA TAATATTATA TTCAAAAAAC AACCTTAATC TAAATATCCC TCATATTTAC AATGAAAAAG AAAAAGCATA TGTAATTTTT CTTAGTGAAG AAGAATTTAT TGAGTTTCTA AAATAG
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Protein sequence | MNKILILPNE KDCNIEGYLY IPSYDVFPFE KINNSWFVRS QRIYALYLAL KNNLKATATL YSITRYVMPP DILKKHIFEL KIGDKITSPE VLFSNLGYER VFNVTDGGQF STRGDIIDFL GPNQIPTRIE LFDNIIEDIR TFDIATQKSI KKLEYAIILP AKEYIEPVLH ETILGEKYKG TFLDYNITFE VVNKEKVIEE YIKKEREIRE LIIDPQLRKK YINFSGIDYN KILEVSKEKI LENTKKRKEK ASDEINSIPV ISQEDFQIGD YVVHKEYGIA KFSGITKITQ KNLEREFLIL QFKDSKLFVP TDRLDLVQKY IGASETVKLD NLRKSNWIRK VNKAKKEIQN TVKELLRLNA LRKMTKGLPL PGDPELEKEF ANTFPHIETE DQLKAIEEVS EDLSADKNMD RLIAGDAGYG KTEVAMRAAF KTVVSGKQVA LLVPTTVLAR QHFENFQKRF KKFGIKVELY DNSLTPKQKE NVKENVKKGI TDIVIGTHGI IASMKFSDLG LLIIDEEQKF GVHQKESFKK IRVNINILSM SATPIPRTLH MALSGIKDMS ILKTPPIGRK NIQVFVSKFD ERIARQAILR EVNRGGQVLY VHNRVNTIKD VADNLKKIVP EVKIEIAHGQ MSKRKMEKII KEFYDGNLDV LVSTSIIENG IDIPNANTLI VDDSHRYGLS QLYQLRGRVG RSEKRAFAYF FHPSKINKTA QERLKAIKEI MGPGSGLQIA LKDMEIRGIG NILGLEQHGF INDIGLNYYL EILNEVLSNL EGKIEPKINT ELIGMKGSIV IPENYVSDPV ERLRLYRRIS SLSTEKEVDE ILNELEDRFG TPPESVINLL KYTKLRILSS KMGISKVIFN ENSIILYSKN NLNLNIPHIY NEKEKAYVIF LSEEEFIEFL K
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