| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1763 |
|---|
| Symbol | |
|---|
| ID | 7317573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1867400 |
|---|
| End bp | 1870042 |
|---|
| Gene Length | 2643 bp |
|---|
| Protein Length | 880 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643616655 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_002513832 |
|---|
| Protein GI | 220934933 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0913667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTCGTTA TCAAATCCAT AGAAGTCAGT CACTTCCGAA AGCTGAAGGG TCCAGTACGC
ATCGAGGGGT TGGAAGACGG ACTGACCATC ATTGCCGGGG ATAACGAGGA AGGGAAGTCG
ACATTGCTCG AGGCCGTTCG TGCGGCCCTG TTCGAGAAAC ACAGTCTGAC GGGTGAGGTC
GCGGAGAGTT TTCAACCCTA TGAGTCCTCG GTCCGTCCCG AGGTCTCCGT GGAGTTCTCG
CTCAATGGGG GTCTGTATCG AATCGAGAAG GGTTTCTGCC AGAAGCCGAC GGCGGAACTG
ACCACGCCAA CCGGGAGTTT CTCTGGGCAG GCTGCGGAGG ACCAGCTCAG GGAGTTACTG
GGTCATTCCT CTCCTGCGCG GGGGGCAAGC AAGCCGGAGC ATCAGGGCAT CTGGGGCATG
CTTTTTGTCC AGCAGGGCAG TGCATTCCAG CCGATCCCCG TCAACGAGTC AGGTCAGCGG
ACTTTGCGTA CCGCCCTGGA AGCCCAGGTG GGCGATGTAT TGGGAGGCCC TGAAAGCGAG
ATGCTGATCA GCAGTGTCAA GGACTCCTAT GACCGCTATT ACACCCCAAC CGGACGCCCA
AAGGGCGAAC TCAAGCAGGT GCATGACGAT GTCGCCTTCG TTGAGGTGGA ACTAAGCAAT
ATTGACGGCC AATTGAGCGA CTTCGACCAC AAGCTTGACG AGCTCGTAAA GCTCGATCTC
GAACTCTCAG GCCCGTTTAA TCCTGACAGG ATGGCGGATC TGCAGGAACG TCTGCAGGTC
GCCCGTGATG CGGCGAAGGG GCTCGAATCC CTGGAGCAGA CGTTCAACCA AACCGGGCAG
GCACTTAAGG TCGCCGCAGT CGAGGCCGAG CAAGCACGGC AGCAATGGGA TGTCAGGCAG
CGCCTGATTC AATCCCTCGA GGACAACGCG AAGAGCCTTG AAAAGCATCG TGAAACGACT
GCGCGAATCG CGCGTGAGCT GGAAGTCCTG GATTCTCAGG TGGCCGAGCG GCAGGGGCAT
TCTGAGCACG CACAAACTGC AGTGCAGGAC GCCAGAAGCG TACTGAGGCT GATGCAATCT
CTGCGTAATG CCAAGGATAT CGAGGTGCAG CTGGAATCAC TCCGGGCTCA GCTTCAGAAG
GGCCAGGATG CGGAGGCAGA GATCCGGGAT ACCAAAAGAC GCATCGCCTC TGTTGAGCTA
CCTAAGGAAT CTCTCGACAG ACTGAGGACC TTATCCAGTC AGATTGATCA TGCCCGGGCA
AAGCGGAGTG CACTGGCCAC GACCCTCGCC CTTGATCTGA ATGGATCCGC GGAAATGGGG
GGTCAAACCC TTGATCCAAA TGCCCGGGTC GAGATCTACA AGCAGGAGAC CCTGAACCTA
GGGCAACTGG GCAGGCTCAC CATCACGCCA GGTGGAGCGA ATGTCAGCGG GATCCTGGCT
GAGTTGGACA GGCTGGAACG CGAGCTTTCA GAGTCTCTCG AGACGCTCAG TGTTGCGAGC
CTCACGGAAG CAGAGGAGCG TGAGAGGCGA GAGCAGGAAC TCAAGAGCCG CCTTGCTACC
GAGCTGGTCA GGCTAAGCGC GGTCGCCCCA GATGGCCTTG ATCCCCACAG GGAGCGAATA
GACGTGCTTG AAGTCCGCCT CTCTGCCATT CGTGAGCAAC TCGGTGATCA TGGTGACGAA
CAGCGTGCCG TAGATGACCG GGCATTACGG GAGGTAGAGG AAAAGCTGGG ACTCGCAGAA
GGTGAGGAGA TGGAGGCCAG ATCTCTCCTT GATGAAGGGC GTAAGCAGCG AGAAGGGATC
CTGAGTGTAC TGGCCGAGGC CCAGGCGGCG CTGAAAGCCA ACCAGGCTGA TGCCGATCGA
TTGACCAGGG ACCTACAGTC AGCGCGTTCT GACCATCCCG ACGAGTCACT GCACGACAAG
GTTCATGCGT CTGAGCAAAC CCTGCTTACT GCCCAAGAGG CACACGAGAA GGCTAAAACA
GCCCTCGAAC AGGCGGATCC CGAGGCGGTC AGGTCAGACC TTGCGACTGC GGAACGTGCA
ATTGAGAACT TCACGAAGCA GCACAATCAG ATCAATTCCA GAATCACCGA GCTGCGCGGG
GAACTCCGGG GACAGGGACA CATGGGGCTG GGTGAAAAAC GCCAGGAGCT GCAAGGAAGG
CTGGATGCCA CTCGCTTGCG TGCGGAAGCG CTCGACAGAC AAGCTGGTGC CATCTCACTT
CTACACCAGG TCCTTTCTGA GGCAGAAGGG GAGGCCCGTG ATCACTTCCT CCAGCCGATC
TCGGAACGCG TGGCCCCACT GCTCAGGCGT TTATTTCCGG ACCATCGCCT CGTGCTCGGG
GATGACCTTG ATATCGCGTT TCTTGACCGG GATGGCCTCA AGGAGCCTTT CTCAAGCCTC
AGTGTAGGCA CACGTGAGCA GCTCGCGATC CTGACCCGGC TGGCATTCGC TCAACTGCTT
GTGGAGCAGG GAAAGCCCGC CATGGTGATC CTGGACGATG CCCTGGTGTA CTCAGACCAG
GAGCGCTTCG AACGCATGAA GCTGATCCTT TCCCAGGCGG CGCAGCACTA CCAGATCCTG
CTGCTGACAT GCAGGCCAGG GGACTATCTG TCACTAGGGG CGCCGAGAGT AATACTCAGT
TAA
|
|---|
| Protein sequence | MLVIKSIEVS HFRKLKGPVR IEGLEDGLTI IAGDNEEGKS TLLEAVRAAL FEKHSLTGEV
AESFQPYESS VRPEVSVEFS LNGGLYRIEK GFCQKPTAEL TTPTGSFSGQ AAEDQLRELL
GHSSPARGAS KPEHQGIWGM LFVQQGSAFQ PIPVNESGQR TLRTALEAQV GDVLGGPESE
MLISSVKDSY DRYYTPTGRP KGELKQVHDD VAFVEVELSN IDGQLSDFDH KLDELVKLDL
ELSGPFNPDR MADLQERLQV ARDAAKGLES LEQTFNQTGQ ALKVAAVEAE QARQQWDVRQ
RLIQSLEDNA KSLEKHRETT ARIARELEVL DSQVAERQGH SEHAQTAVQD ARSVLRLMQS
LRNAKDIEVQ LESLRAQLQK GQDAEAEIRD TKRRIASVEL PKESLDRLRT LSSQIDHARA
KRSALATTLA LDLNGSAEMG GQTLDPNARV EIYKQETLNL GQLGRLTITP GGANVSGILA
ELDRLERELS ESLETLSVAS LTEAEERERR EQELKSRLAT ELVRLSAVAP DGLDPHRERI
DVLEVRLSAI REQLGDHGDE QRAVDDRALR EVEEKLGLAE GEEMEARSLL DEGRKQREGI
LSVLAEAQAA LKANQADADR LTRDLQSARS DHPDESLHDK VHASEQTLLT AQEAHEKAKT
ALEQADPEAV RSDLATAERA IENFTKQHNQ INSRITELRG ELRGQGHMGL GEKRQELQGR
LDATRLRAEA LDRQAGAISL LHQVLSEAEG EARDHFLQPI SERVAPLLRR LFPDHRLVLG
DDLDIAFLDR DGLKEPFSSL SVGTREQLAI LTRLAFAQLL VEQGKPAMVI LDDALVYSDQ
ERFERMKLIL SQAAQHYQIL LLTCRPGDYL SLGAPRVILS
|
|---|
| |