| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1275 |
|---|
| Symbol | |
|---|
| ID | 7317764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1367479 |
|---|
| End bp | 1368585 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643616163 |
|---|
| Product | hydrogenase formation HypD protein |
|---|
| Protein accession | YP_002513348 |
|---|
| Protein GI | 220934449 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.213133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG ACGCCCGCCA GTGGCTTGAG CGCATCCGAT CCCTGGATCT GCCTCCCCGG
GTGCGCATCA TGAACGTCTG CGGCGGGCAT GAGCGCTCCA TCACTTTGGC GGGGCTGCGC
TCCGCGCTGC CGCCATCCAT CGAACTGATC CCCGGTCCAG GTTGCCCGGT GTGCGTCTGT
CCCGAGGAGG ACATCTACCA GGCCATCCAG CTGGCGCTGC ACGAAGACGT CACGCTGGTG
GCCTTCGGTG ACATGTTGCG GGTGCCGGTC AACGTGAAGA AGAGCGAGGC GCGCTCCCTG
GTGGAGGCCC AGGCGGCGGG TGCCGACGTG CGTCCCATCG CCTCGCCCAC CGAGGCGGTG
AGCATCGCCC GTGACCATCC GGATCGGGCC GTGGTGTTCT TCGCCGCCGG CTTCGAGACC
ACCACCGCGC CGGTGGCGGC CATGCTGGCC GAGGGCGTGC CGGAGAATCT CTCGGTGCTG
CTCTCCGGGC GCCGGACCTG GCCGGCGGTG GCCATGCTGC TGGAATCCGA GAGCCCTGGC
TTCGACGCGC TTATCGCCCC GGGCCACGTG TCCACGGTCA TGGGTCCCGA GGAATGGGAC
TTCGTGGTGG AACGCCACCA CATGCCCGCC GCCGTGGCGG GGTTCACCCC CGAGAGTCTG
CTGGCGGCCA CCTACTCGGT GCTGCGTCAG CACATCTCCG GCGAGTATTT CCTGGACAAC
TGCTATCCGG GCGTGGTGCG TCCGGGCGGC AATCCCACGG CACGGCGGCA AATGGAACGG
GTACTGGACG TGGTGGATGC CAACTGGCGC GGTGTGGGTG TAATCCCGGA CTCCGGCTTC
GAGCTCACAG CCGAACTGGC CGCCCACAAT GCCCGGCGGC TGTTCCCGTC CTACCAGGAT
GCCGCCCGCA GGCGGGCCGG CCAGATGCCC CCGGGTTGTG ATTGTGCCAG GGTGGTTCTG
GGACGTATCT ATCCTGACGA ATGCCGCCTC TACGGCAAGG CCTGCACGCC GCGCAACCCG
GTCGGGCCGT GCATGGTCTC CGACGAGGGG GCGTGCCGCA TCTGGTGGGC CGGGGGTGTT
CGGCAGCAGA GGCCGCGTGT CGCCTGA
|
|---|
| Protein sequence | MSQDARQWLE RIRSLDLPPR VRIMNVCGGH ERSITLAGLR SALPPSIELI PGPGCPVCVC
PEEDIYQAIQ LALHEDVTLV AFGDMLRVPV NVKKSEARSL VEAQAAGADV RPIASPTEAV
SIARDHPDRA VVFFAAGFET TTAPVAAMLA EGVPENLSVL LSGRRTWPAV AMLLESESPG
FDALIAPGHV STVMGPEEWD FVVERHHMPA AVAGFTPESL LAATYSVLRQ HISGEYFLDN
CYPGVVRPGG NPTARRQMER VLDVVDANWR GVGVIPDSGF ELTAELAAHN ARRLFPSYQD
AARRRAGQMP PGCDCARVVL GRIYPDECRL YGKACTPRNP VGPCMVSDEG ACRIWWAGGV
RQQRPRVA
|
|---|
| |