| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0534 |
|---|
| Symbol | |
|---|
| ID | 7317882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 564263 |
|---|
| End bp | 565966 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643615419 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002512618 |
|---|
| Protein GI | 220933719 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02094] alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.258001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCA CCCTCGAGCA ATTCGTCCAC ACCCCCCGCA TCGCCTACTT CTCAATGGAG
ATCGGCCTGC GCAGCGAGAT CCCCACCTAC AGCGGTGGCC TGGGTATGCT GGCCGGCGAC
ACCCTGCGCA GCGCCGCCGA CCTGTCCATC CCCCTCGTGG GCGTCACCCT GGCCAGCCGC
AACGGATATT TCCGCCAGGT GCTGGACGAA TTCGGCCGGC AGACGGAGCT GCCTGATCCT
TGGGAACCGG GTGACTGGGC CATCCCGCTG CCGGCGAAGA TCTCCGTGCC CGTGGCCGAC
CGCGACGTGT GGGTGCAGGC CTGGCTCTAT GGGCTGAGCG GCGCCTCGGG CTATCAGGTC
CCGGTGCTGC TGCTGGATAC CCAACTGCCG GAAAACGGCC CCGAGGACCG ACGCATCACC
GATCAACTCT ACGGCGACGG TATCGAATAC CGGCTGACCC AGGAGATCGT GCTGGGCATC
GGCGGCGCGC GCATGCTCCA GGCCCTGGGT TTCAAGGTTC ACACCTACCA CATGAACGAA
GGCCATTCGG CCCTGCTCGC CCTGGAGTTG CTGCGTCGGG ACGAGCGCCG GCCGGACCGG
ATGGAGCCCC ACGGGGACGT CTACGACACG GCCCGGGTTC GGGAGCAATG CCTGTTCACC
ACCCACACCC CCGTGGAGGC CGGCCACGAC CAGTTCGACT ATCCCCTGGT GGACCGGCTG
CTTGCCCGCT TCATGGACCT CAACGAGATC CGGCGCCTGG CCGGCAACCA GCGACTCAAC
ATGACCCGCC TGGCCCTGCG CCTGTCCGGC TACGTGAACG GCGTGGCCAA GACCCATGCG
GAGGTCTCGC GGCAGATGTT TCCCGAGGTC CACGTGCATG CGGTCACCAA CGGTGTGCAC
CCGGGCACCT GGACCGCCCC GGCCGTACAG CGGCTGTTCG ACCGGTACAT CCCCGCCTGG
CGCTTCGAGC CGGACATGCT GGTACGCGCC GACCAGATCC CGCCCCAGGA GACCTGGAGC
GCCCATACCG AGGCGAAGGC GGCACTCCTC GATGCCGTGC GCAGGCTCAC CGGCGTAAGC
CTCGACCCGG AGGTGGCCAC CCTGGGTTTC GCCCGGCGCA TGACGGCCTA CAAGCGACCG
GATCTGTTGT TCAGTGATCT GGGTCGACTC AAGACCATCG CCCAACGCCA CCCCATACAG
ATCGTCATGG CCGGCAAGGC CCATCCCAAC GATTCCGGCG GCAAGGCCCT CATCGAGCGC
CTGTTCCGCA TGCGCGACGA ACTCTCCGGT GCTATCCGCA TGGTGTTCCT GCCCAACTAC
AACATGCACC TGGGGCACCT GCTCACCTCC GGTGTCGACC TGTGGCTCAA CAACCCGCTG
CGTCCCCTGG AGGCCTCGGG CACCAGCGGC ATGAAGGCCG CCTTTAACGG CGTGCCCAAC
CTGAGCGTGC TGGACGGCTG GTGGATGGAG GGCTGTATCG AGGGGGTCAC CGGCTGGGCC
GTGGGCAACG GCGGCGGAGC GGAATCCAAC GGCGGCGACG CCCAGGCCCT GTACGCCACC
CTGGAAAACA AGGTGCTGCC CCTATTCTAC GACGACCGGG CAGGCTGGAT CCGGGTCATG
CAGGGCGCCA TCGCCAAGAA CGCCTATTAC TTCAACAGCC ATCGCATGAT GCGCCGCTAC
GCCACGGCCG CCTATATCCG CTGA
|
|---|
| Protein sequence | MPITLEQFVH TPRIAYFSME IGLRSEIPTY SGGLGMLAGD TLRSAADLSI PLVGVTLASR
NGYFRQVLDE FGRQTELPDP WEPGDWAIPL PAKISVPVAD RDVWVQAWLY GLSGASGYQV
PVLLLDTQLP ENGPEDRRIT DQLYGDGIEY RLTQEIVLGI GGARMLQALG FKVHTYHMNE
GHSALLALEL LRRDERRPDR MEPHGDVYDT ARVREQCLFT THTPVEAGHD QFDYPLVDRL
LARFMDLNEI RRLAGNQRLN MTRLALRLSG YVNGVAKTHA EVSRQMFPEV HVHAVTNGVH
PGTWTAPAVQ RLFDRYIPAW RFEPDMLVRA DQIPPQETWS AHTEAKAALL DAVRRLTGVS
LDPEVATLGF ARRMTAYKRP DLLFSDLGRL KTIAQRHPIQ IVMAGKAHPN DSGGKALIER
LFRMRDELSG AIRMVFLPNY NMHLGHLLTS GVDLWLNNPL RPLEASGTSG MKAAFNGVPN
LSVLDGWWME GCIEGVTGWA VGNGGGAESN GGDAQALYAT LENKVLPLFY DDRAGWIRVM
QGAIAKNAYY FNSHRMMRRY ATAAYIR
|
|---|
| |