| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0685 |
|---|
| Symbol | |
|---|
| ID | 3580528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 788396 |
|---|
| End bp | 790036 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637684378 |
|---|
| Product | CdaR family transcriptional regulator |
|---|
| Protein accession | YP_288746 |
|---|
| Protein GI | 72161089 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.217307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGGTA GTGCGGCGTA CACTCAGGCC GTGGTGCTCT CCCTCGCTGA TGTCCTCGAC
TTGCCCGTGG TGCGGCGGGC CCGGCCCCGG GTCGTGGTGG GCGCGGACCG TCTCGACACG
CCCGTGCGCT GGGCGCACGT CGCCGAAGTC ACCGACCTGG CGCATCTGCT GCGCGGCGGT
GAACTCGTGC TGACCACGGG GATCGCGCTT CCCGACGCCG CAGCAGCGCT GCGCCGGTAC
GTCACCGACC TGGCCGAGGC CGGGGTCAGC GGGATCGCCG TCGAGCTGGG CCGCAAATAC
CGGCGGAGGC TGCCGGATGC GCTCGTGGAC GCGGCCCGGG GGGCGGGGGT TCCCGTGATC
TGTCTGGAAC GGGAGACCCG GTTCGTGGAG ATCACCGAGG CCGTGCACAG CCGGGTGCTC
ACCGAGCAGT TAGAGGAGTT GCGCGCCTCC GAGCGGATGC ACACCGTGTT CACGGAGCTG
TCGCTGGAAG GGGCGCCCCG GGACCGGGTC CTGCGGGAGG TGGCGCGGCT GTCCGGTTGT
CCCGTGGTGG TGGAGAACCT CGCCCACCAG GTGCTGGCCT ACGACCTCAA CGGCGAAGAC
CCGGGAGTGG TGCTCGCGTC CTGGGAGAAC CGGTCCAGGT CGGTGGCTTC CACGCGGCGG
ACCTTCCACG ACCCGGTGAC CGGCTGGCTG GTCACCACGG TGGGGGCGCG CGGCCAGGAC
TGGGGGCGGC TCATCCTCGT CTGCGGGGCC TCCCCCACCC CGTCGCAGAC CACACTGGTG
GAGCGGGCGG CGACCACGCT CGCGCTGGGC CGTCTGCTGG AACGGCAGCA GGAGAGCCTG
GAACGCCAAA CGCATCGCAC GATCATCGCG GGGATCATCG ACCGCTCCTA CTCGGACCCG
GAAGAAGCAC TGGTCCGGGC CCGGGCTGTG GGCGTGCCGC TGGCCGGCCG CACCCTGGTG
GTCGTGGTGC TGCGGCTCCG CGACGCGGGT ACCGGGCTCG CCACGCAGGC CCGGCTCGCC
GAAGCAGCTG AGAACGTGGC CCGGGTGTGC CGGGAGCTGC GGCTGTCCGC CCTGGTGGGG
TCGCTTGACG ACCTGCGCGT AGGCGTCCTG CTGGCGCTGC CCGCCACCCA GCGGGTGGAG
CGCTGCCTGG ACCGGCTCGC CCCGCTCATC CACGAGCACG CCGGCAGCAG AGTGGTGGTC
GCCGTGGGGT CACCGGTTGA CGACATCCGG CGGGTGCGGT CCTCGTTCCT GGAAGCCCGG
CAGGTGGCGG ACGTTGCCGT GCACCAGGCC GCGGACCGCC CCTACCACCG GCTGTTCGAC
CTGCGGCTGC GCGGCCTGCT GCACCTGCTG CGGGACGACG AGCGGCTGCA GACCTATGTG
GAGCGGGAGC TGGGCCCGCT GCTCGCCTAC GACGCCCAGC ACGGCGAAGA CCTCACGTCG
ATCCTGCGGC ACTATTTGGA CGCGGGGCGG AACAAGGCGC TGGCCGCGTC CCGTGCCCAC
CTGTCCCGTC CCGCTTTCTA CGGCCGCCTG CACCGCATTG CCCGTATCCT CGGCGCGGAT
CTGGACTCGG TCGAGACCTG TCTGTCTCTC CACGTCGCGC TTTTAGCGCT GGAGTCCGTA
CGCGACCGAA TCTCTCGGTA A
|
|---|
| Protein sequence | MPGSAAYTQA VVLSLADVLD LPVVRRARPR VVVGADRLDT PVRWAHVAEV TDLAHLLRGG
ELVLTTGIAL PDAAAALRRY VTDLAEAGVS GIAVELGRKY RRRLPDALVD AARGAGVPVI
CLERETRFVE ITEAVHSRVL TEQLEELRAS ERMHTVFTEL SLEGAPRDRV LREVARLSGC
PVVVENLAHQ VLAYDLNGED PGVVLASWEN RSRSVASTRR TFHDPVTGWL VTTVGARGQD
WGRLILVCGA SPTPSQTTLV ERAATTLALG RLLERQQESL ERQTHRTIIA GIIDRSYSDP
EEALVRARAV GVPLAGRTLV VVVLRLRDAG TGLATQARLA EAAENVARVC RELRLSALVG
SLDDLRVGVL LALPATQRVE RCLDRLAPLI HEHAGSRVVV AVGSPVDDIR RVRSSFLEAR
QVADVAVHQA ADRPYHRLFD LRLRGLLHLL RDDERLQTYV ERELGPLLAY DAQHGEDLTS
ILRHYLDAGR NKALAASRAH LSRPAFYGRL HRIARILGAD LDSVETCLSL HVALLALESV
RDRISR
|
|---|
| |