Gene Tfu_0664 details

Gene Information

• Locus tag: Tfu_0664
• Symbol: rimM
• ID: 3580774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 770029
• End bp: 770541
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637684357
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_288725
• Protein GI: 72161068
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 0.377331
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGTCTCG TCGTTGGACG AATCGGCCGC CCGCACGGGG TCAAAGGCGA AGTGACCGTT 
GAGGTGCGGA CCGACTCACC CGAGGAACGC TTCGTGGTGG GCAAGGCACT GGAGACCGAC 
CCCGCTGACG TCGGACCGTT GACGATCACC GCGCAGCGGT GGCACAAGGA CCGGCTGCTG 
GTGCGTTTCG AGGAAGTTCC CGACCGCACC GCGGCTGAAC AGTTGCGCGG CGTCTTCCTG 
GTCGTGGACT CTGCCGAGCT GCCCCCGTTG GACGACCCCG ACGAGTTCCA CGACCACGAG 
CTCATCGGCT TGCGGGTGGA GACGGTCGAC GGCGAAGCGG TCGGAGAAGT CGTGGACGTC 
CTGCACCACG CCCAGGACAT GCTGGTGGTC AGCGGGGAGA AAGGCTCGGA GGTCCTCGTG 
CCGTTCGTCC GCGAGCTGGT CCCCGACGTC GACACCGCGG CAGGCCGTGT CGTCATCGAC 
CCGCCCCCCG GCCTGCTGGA ACTCGGTCGC TGA 

 

Protein sequence

MRLVVGRIGR PHGVKGEVTV EVRTDSPEER FVVGKALETD PADVGPLTIT AQRWHKDRLL 
VRFEEVPDRT AAEQLRGVFL VVDSAELPPL DDPDEFHDHE LIGLRVETVD GEAVGEVVDV 
LHHAQDMLVV SGEKGSEVLV PFVRELVPDV DTAAGRVVID PPPGLLELGR