| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Teth514_0204 |
|---|
| Symbol | |
|---|
| ID | 5876117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoanaerobacter sp. X514 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010320 |
|---|
| Strand | + |
|---|
| Start bp | 212353 |
|---|
| End bp | 213570 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641540546 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_001661858 |
|---|
| Protein GI | 167038873 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT TACATACTTC AGACTGGCAT TTAGGGAAGG CTCTTGAAAA TTTTTCGAGG
ATTGAAGAGC AGGAGAAATT TTTAGAGGAT TTTGTTAATA TAGTTGAGGA AAATGATGTG
GATTTGGTTA TAATTGCTGG AGATGTTTAT GATTCTTTTA ATCCTCCTGC AAAAGCGGAA
ACCCTTTTTT ACAACACTTT AAAAAAGCTT TCTAATGGAA ATAGGGTGGT TTTGGTTATA
GCAGGGAATC ATGACAATCC TGAAAGGCTT TCTGCTGCCA GCCCTCTTGC CTATGACCAA
GGTGTTATAC TTTTAGGGAT ACCCAAAAGC ATTGTGCCTA CTGGGGATTT TGGAAAGTTT
AAAATTTTAG ACTCTGGTGA AGGCTTTTTT GAAATAGAAA TAAAAGGAGA AAAAGCGGTA
ATTATAGCTT TGCCGTATCC CAGCGAAAAA AGGCTAAATG AAATTTTTAC AGCGGAATTG
GATGAAGAGA AAAGACAGAA AAGTTACTCT GAAAGAGTTG GTGAAATTTT TAATGACCTT
TCTAAAAAAT ACAGAGAAGA TACTATAAAC ATTGCGGTAT CTCATATTTT TGTTGCAGGA
GGAGAGGAGT CAGGTTCAGA AAGGCCCATT CAGTTAGGAG GAAGTTTTAC AGTAGAAATA
AGGCACCTGC CACAAAAAGC GCAGTACATA GCTCTCGGAC ACCTTCACAA ACCCCAGAGA
ATTTCTTCTA CTCTTCCTGC TTATTATTCT GGTTCCCCTC TTCAGTACAG CAAAAGTGAG
ATGAACCATT CTAAATGTGC TTATTTAGTA GATTTAAAGG CAGGAGAACC TGCACTTGTG
AAGGAAATAT ATTTTAAAAA TTACAAGCCT ATTGAAGTGT TTAGGTGTAA TGGTATAGAG
GAAGCTTTAG AGATTTGCAA TGAATACAGG GATAAAGATA TATGGGCATA TTTCGAGATT
AAAACTGAGT TTCCACTGCC TTCTTCAAAG ATAAAAGAAA TGAAGAGCAT ATTACCGGAT
ATAGTTGAAA TAAAGCCAAT TTTGCCAGAG GATGAGATGG AAATTGAAGA CTATGAGATA
GATGATAAAA GTGTAAAGGA ACTTTTTGAA GAATTTTATT TAAAGGAAAA CAAAGTTTCT
CCAACAGAGG AGGTTTTAGA ACTTTTTATG AGTATAGTAA AGGAAGAGGA TGAGGAAGAT
GAGACCTCTG AAGCTTAA
|
|---|
| Protein sequence | MKILHTSDWH LGKALENFSR IEEQEKFLED FVNIVEENDV DLVIIAGDVY DSFNPPAKAE
TLFYNTLKKL SNGNRVVLVI AGNHDNPERL SAASPLAYDQ GVILLGIPKS IVPTGDFGKF
KILDSGEGFF EIEIKGEKAV IIALPYPSEK RLNEIFTAEL DEEKRQKSYS ERVGEIFNDL
SKKYREDTIN IAVSHIFVAG GEESGSERPI QLGGSFTVEI RHLPQKAQYI ALGHLHKPQR
ISSTLPAYYS GSPLQYSKSE MNHSKCAYLV DLKAGEPALV KEIYFKNYKP IEVFRCNGIE
EALEICNEYR DKDIWAYFEI KTEFPLPSSK IKEMKSILPD IVEIKPILPE DEMEIEDYEI
DDKSVKELFE EFYLKENKVS PTEEVLELFM SIVKEEDEED ETSEA
|
|---|
| |