| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0329 |
|---|
| Symbol | |
|---|
| ID | 3762354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 369534 |
|---|
| End bp | 371075 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637785038 |
|---|
| Product | Phage integrase |
|---|
| Protein accession | YP_390599 |
|---|
| Protein GI | 78484674 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.793111 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTC AAAAACTTAA AAGTCCTTTG AATGGTGCTA AATCATTTGA AAATGTTTTC
AGTACCTATG GTTATGAATT TTATGAGGGT GACTTGGTGT GGAAACTTTC AAGAGATACC
CGTATTAATT TAGAGTTCGT TCTTTCGAAT CTTGATGATA GTTATATATA CGGATTTATA
AAGACACTAA GTATTATTTG TCAGACCAGA AGCGCTGGAT ACGGAAGTTC GATTAATAGC
AGTTTTGCAC TTTTTCTAAA ACTAACAAAT GCTAAAACCA TCAATTCAAA TACGTTGATT
AACTTCAGGT CAGGGTTGAA AAAGGTAAAT GTTCATAGGC TGGGTACTAT GAGAACCTTT
CTGAAGCTTT GGCATGATTT GGGTTACAAG GGCATTGATG AGTCGCTAAT CGATATGCTC
TACTCTTGGC GTATTCCTGG TTCTATCAAG GGGGATGTTG TAAAAAGGTT AGACCCCTAT
GATGGTCCGT TGACTGATAT TGAGTTGCTG GCGTTCAGCG AGGGACTTGC CTTGGCTTAC
GAGAGGTCTG ATATAGACCT GTTTTCTTAC TCCATGATAA AGGTTTTTTT GGCTACAGGT
CGCAGGCCAA AGCAAATCGC TGAATTGAAG TTGATGGATA TACAAAATGA AGGAAATAAA
TTTTTTCTTA ACATCCCAAG AGCAAAGCAA AGGTTAGGGG GATTTAGGAC TTCATTTAAG
CGCTTTGCAG TAACGTCTGA CTTGTATAAT CTCGTTCTAC TGCAAAAAGA AGAATTGGTT
CTAAAGGTTG AAAAAATTCT AGGATTACGA TTGCCGGATG AGTTAAAGCT GAAACTTCCA
TTGTTTCCAA ATTTTAGTGT AATTGAGGGA AATTCATTAA CCATTCAGCA GTTTGAAAAT
CTAATAGAAA CTGATCAAGT TCATCTGACA ACTGTGAATA TTGATCTTAT ATTTAAATCG
GTATCAAAAG CAGTTAACGT CTTTTCAGAA AGAACATCAG ATCAATTAAA AGTAATGCCC
TATCGCTTCA GATACACTAT TGGCACACGA GCAGCGCGAG AGGGGTTCGG AAAATTGATC
ATAGCTGAAC TTCTTGATCA TGAAGATACG CAGAATGCGC ATGTATATGT TGAGAATATT
CCTGAATACG CTAGACGAAT AAATGAAAAA GTTGGCCACT TAATGGCTCC GTATGCAAAA
GCTTTTGCCG GTGTGCTTGT GGATTCAGAG GACGATGCCA TTCGTGGAAA GGATAAAGCG
AGCAGAATTA GGCTTAATCA AGATGCAAAT ATCGGGACGT GCGGAAGCTA TGACTATTGT
GGCGCAAATG TACCGGTTCC ATGCTATGCA TGCGCACATT TCCAACCTTG GTTAGATGCG
CCTCACCAAG AAGTCTTGGA TAGGTTGGTT GAAGAAAGAG GGCGTATTGT TGAACTGACC
GAAGATTTAG CGGTTGCTTC AGCTAACGAT AGAATAATCT TTGCAGTTTC AGAAGTTATT
CAACGCTGTG AAAAACGAAA GCAGGAGTTG ACTCGTGCCT AG
|
|---|
| Protein sequence | MDAQKLKSPL NGAKSFENVF STYGYEFYEG DLVWKLSRDT RINLEFVLSN LDDSYIYGFI
KTLSIICQTR SAGYGSSINS SFALFLKLTN AKTINSNTLI NFRSGLKKVN VHRLGTMRTF
LKLWHDLGYK GIDESLIDML YSWRIPGSIK GDVVKRLDPY DGPLTDIELL AFSEGLALAY
ERSDIDLFSY SMIKVFLATG RRPKQIAELK LMDIQNEGNK FFLNIPRAKQ RLGGFRTSFK
RFAVTSDLYN LVLLQKEELV LKVEKILGLR LPDELKLKLP LFPNFSVIEG NSLTIQQFEN
LIETDQVHLT TVNIDLIFKS VSKAVNVFSE RTSDQLKVMP YRFRYTIGTR AAREGFGKLI
IAELLDHEDT QNAHVYVENI PEYARRINEK VGHLMAPYAK AFAGVLVDSE DDAIRGKDKA
SRIRLNQDAN IGTCGSYDYC GANVPVPCYA CAHFQPWLDA PHQEVLDRLV EERGRIVELT
EDLAVASAND RIIFAVSEVI QRCEKRKQEL TRA
|
|---|
| |