Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1439 |
Symbol | |
ID | 3672280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1526329 |
End bp | 1528299 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637710124 |
Product | type II secretion system protein D |
Protein accession | YP_315197 |
Protein GI | 74317457 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0989759 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCCTTCC ATCCGTCGCC CTTGCTCACC GCGCTGGTCG CGTTCAGCCT GACCGCGTGC GCAGGCACCG GTCTCAAGGA GGGCCGCAAG CTGATCGACG CCGGGCAGCC CGAGGCCGGG ATCGCGCGCC TGCGCACCGC CCTGGCCGAA GAACCCGACA ACATCAAGCT CAAGGCCTAC TACCATACGC AGCGCGAGCG CATCGCCAGC GAACTATTGG TGCGGGCGCA ACAGGATGTC CACGCCGCAC GCTTCGACGC GGCCGAAACC AAGCTCGACA GCGTGCTCGA AATGCATCCG GAAAATCCGC GCGCGCTCGC CCTGCGCGCC AATCTCGAGA CGGCGCGCCG CCACGAAGCG GCCTTGCAGC AGGCGAACAA GGCGCTCGCC GCGGGTAAGG TCGACGCGGC CGCGCAGGCT GCGCGCGAGA TCCTCGCGCA GGCGCCGGGG CATGCCGGCG CGCTTGCCCT GCTGCGGCAG ACCCAGGCCG CGCACGCGCC CGACGAACTC GCGATGCGCC GGCTCGGCCC GGCCTTTCAC AAACCGATCA CGCTGGAATT TCGCGACGCG CCGCTGCGCA ACGTCTTCGA CATGATCGCC CGCCAGTCCG GCCTCAACTT CGTTTTCGAC AAGGATGTCC GTCTCGACAC CAAGGCCACG CTGTTCGCGC GCAACACGCC GATCGACGAG GCCGTCGACA TGCTCCTGAT GACCGGGCAG CTGTCGAAAA AGGTGGTCAA CGCCAACACG CTGTTGATTT ATCCCGACCA GCCGCAGAAG CAGAAGGCCT ACCAGGAGCT GATGGTGAAA AGCTTCTACC TCGGCAACGC CGACGCCAAG GCGACGATGG CAATGCTGCG CACGCTGGTC AAGGCGAAGG ACCTGCACGT CGACGAACGG CTCAACCTGC TGGTCATGCG CGACACGCCC GATGCGATCC GTCTCGCCGA GCGCATCGTC GCCGTGCAGG ACCTGGCCGA GCCCGAGGTC ATGCTCGAGG TCGAGGTGCT CGAAGTGAAG CGCGGGCGCC TGCTCGACCT CGGCATCCAG TACCCGACCA ATTTCAGCCT GCTCAACCTG CCGCCGGCGA CGAGTTCGAC CATCGGCCCC GGCGGGGTCG TCACCAATAC GACCCCGCCG CCATCGGTGC TGACCGTCGA GAGCCTGAAG AACATCACGG CGAGCCAGAT CGCGATCAGC CCGACGCCCG GCGTCGACCT CAGAAAGCAG GACAGCGACG TCAACATCCT CGCCAATCCG CGCATCCGCG TGAAGAACCG CGAAAAGGCC AAGATCCACA TCGGCGACAA GGTGCCGGTG ATCACGTCCA ACACGACGTC GACCGGCGTC GTCTCCGAAT CGGTGTCGTA TCTCGACGTC GGCCTCAAGC TCGACGTCGA ACCGAGCGTG CTGATGCGCG AGGACGTGCA GATCCGCGTC GGCCTCGAGG TTTCCAACAT CGTGCGCGAG ATCCGCAGCG GCAACGGCAC GCTGACCTAC CAGATCGGGA CGCGCAACGC CGGCACGACG CTGCGCCTGA AGGACGGCGA GACCCAGGTG CTCGCCGGCC TGATCTCGGA CGAGGACCGC AGCACGGCGA GCCGCATTCC CGGGCTCGGC GATCTGCCGC TGATCGGCCG CCTGTTTTCG AGCCAGCGCG ACGAGCGCAA CAAGACCGAA ATCGTGCTTC TGATCACGCC GCGGGTGCTG CGCAGCGACG CGACGCGGCT GCCCGCACTG ACCGAATTCC GGGGCGGCAC CGAGAACGCG ATCGGCGGCG GCGGCGCCGT GCCGTTCAGC GCGCCGGCCC TGCCCGAAGC GTCGCAGCCG CCGCTGCCCG ACGAAGGCCC GACCTCGCCG TCGGCGATTG CACCCGCGCC CGAGTCGGAG ATCCCGCCGG CGCCCGACAC GTTCGGGACG CCGAGCGTGC CTGTCCCACA GATTCCCGCA CCGCCGGACG CGGCCGATTG A
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Protein sequence | MSFHPSPLLT ALVAFSLTAC AGTGLKEGRK LIDAGQPEAG IARLRTALAE EPDNIKLKAY YHTQRERIAS ELLVRAQQDV HAARFDAAET KLDSVLEMHP ENPRALALRA NLETARRHEA ALQQANKALA AGKVDAAAQA AREILAQAPG HAGALALLRQ TQAAHAPDEL AMRRLGPAFH KPITLEFRDA PLRNVFDMIA RQSGLNFVFD KDVRLDTKAT LFARNTPIDE AVDMLLMTGQ LSKKVVNANT LLIYPDQPQK QKAYQELMVK SFYLGNADAK ATMAMLRTLV KAKDLHVDER LNLLVMRDTP DAIRLAERIV AVQDLAEPEV MLEVEVLEVK RGRLLDLGIQ YPTNFSLLNL PPATSSTIGP GGVVTNTTPP PSVLTVESLK NITASQIAIS PTPGVDLRKQ DSDVNILANP RIRVKNREKA KIHIGDKVPV ITSNTTSTGV VSESVSYLDV GLKLDVEPSV LMREDVQIRV GLEVSNIVRE IRSGNGTLTY QIGTRNAGTT LRLKDGETQV LAGLISDEDR STASRIPGLG DLPLIGRLFS SQRDERNKTE IVLLITPRVL RSDATRLPAL TEFRGGTENA IGGGGAVPFS APALPEASQP PLPDEGPTSP SAIAPAPESE IPPAPDTFGT PSVPVPQIPA PPDAAD
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