| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3684 |
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| Symbol | |
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| ID | 4075653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 742561 |
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| End bp | 743589 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005204 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_611913 |
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| Protein GI | 99078655 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.400561 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATTC TGCGCTACGC GCTCTATCGC TTTGGCACCA TGCTGCTGAC ACTCCTACTG
GTGTCGGTGC TGATCTTCTG GATCATCAAC TTGCCGCCTG GCGACTTCCT GTCGAACCAG
ATTGCTGAGC TGCGCGCCAC GGGTCAGGAG GCCGGTGTCG CCAAGGCTGA GTTCCTGCGC
AAGGAATATG CGCTCGACCG CTCCCTCGCG GAGCAATATC TGATCTGGAT GGGCTTCTGG
CCCGGCCCTC ACGGGTTTTC CGGCATGCTG CAGGGCAATT TTGGCTGGTC CTTTGAATTT
GACCGCCCCG TGGCAGAGAT CGTGGGCGAC AGCCTTTGGC TCACGGTTCT GGTGAACCTC
GCAGCGGTGC TGTTTGTCTA TATCGTCGCC CTGCCCCTTG GCGTTCTGGC CGCCGCCAAG
TCGCGCACGA TGATCGATTA TACAGCAGCT TTTATTGGCT ATTTGGGGCT TGCCACGCCG
AACTTCCTGC TTGCCCTGAT CCTGTTTTAC TATGGGCATC AATACCTCAA CCTGCCCATC
GGCGGCCTGA TGGCGCCAGA GTTTGAGGGC GAGCCGATGT CTTGGGAAAA GGTCAAATCC
ATCCTCATTC ACCTGATCGT GCCCACCTTT GTGATCGGCA CCTCGGGAGC CTCCGCGATG
ATGCAGCGCC TGCGTGCCAA CATGCTGGAC GAGCTGGGCA AACCCTATGT GGAAACCGCT
GTGGCCAAGG GTATGCGCCC GTCTCGAATG TTGGCAAAAT ATCCGCTGCG GGTGGCGTTT
AACCCCTTTG TGGCCGACAT CGGCAATCTG CTCCCGGCAA TGGTCTCCGG CTCGGTTCTG
GTCTCTGTCG TGCTGGGCCT GCAAACCATC GGGCCGGTCC TGCTGCAGGC GCTCAAGTCG
CAGGACATGT TCCTGTCGGG ATTCGTTTTG ATGTTTGTCG CGCTTTTGAC CCTCATCGGC
ACCATGATCT CCGACGTGCT CTTGGTGCTG CTTGATCCGC GCATCCGCTA TGAGGGGCGC
AAATCATGA
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| Protein sequence | MEILRYALYR FGTMLLTLLL VSVLIFWIIN LPPGDFLSNQ IAELRATGQE AGVAKAEFLR
KEYALDRSLA EQYLIWMGFW PGPHGFSGML QGNFGWSFEF DRPVAEIVGD SLWLTVLVNL
AAVLFVYIVA LPLGVLAAAK SRTMIDYTAA FIGYLGLATP NFLLALILFY YGHQYLNLPI
GGLMAPEFEG EPMSWEKVKS ILIHLIVPTF VIGTSGASAM MQRLRANMLD ELGKPYVETA
VAKGMRPSRM LAKYPLRVAF NPFVADIGNL LPAMVSGSVL VSVVLGLQTI GPVLLQALKS
QDMFLSGFVL MFVALLTLIG TMISDVLLVL LDPRIRYEGR KS
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