| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3370 |
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| Symbol | |
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| ID | 4075269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 381777 |
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| End bp | 383009 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004878 |
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| Product | deoxyribodipyrimidine photo-lyase family protein |
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| Protein accession | YP_611604 |
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| Protein GI | 99078346 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.455231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACAC AAGAACCGCA AATAGGCCCC GCGACACGCG CCGAAGCTCT GCTGCGAATG
GAGGCATTCA CGCCGCGCAT GGGGCTCAAC TACGCGACAT TTCGCAACCA TGACTATGGG
CCTCAACGTC AAAGCGCTGT GTCGATGTTA TCGCCCTATC TTCGCCGTCG CCTCCTGACC
GAGCCGGAAG TGATTGCGGC AGCCTTGGCG GCACACGGAC CTCAGGAGGC AGACAAATTC
GTCCAAGAAG TCCTGTGGCG CGGCTATTTC AAGGGATGGA TGGAGCGGCG ACCGGAGGTC
TGGGCAAACT ATATCACCGG GCGCGATGCG GACTTCGTCG CCCTTGAAGA GGATCCGGGG
TTGGCGATAC GCGTGAATGC TGCAGAAACG GGTGAGACCG GTCTTGCCTA TTTCGATACC
TGGGCCAAGG AGCTGGTGCG CACAGGGTAT CTGCACAATC ACGCGCGGAT GTGGTTTGCG
TCGCTTTGGA TCTTCACGCT CAAGCTGCCG TGGCGGTTGG GAGCAGATTT CTTCCTTCGA
CACTTGCTGG ACGGCGACCC CGCGTCGAAC ACTTGTTCGT GGCGCTGGGT GGCAGGACTT
CATACGCGGG GCAAGCCCTA CGTGGCGCAA GCCTCGAATA TCGCGCGGTT CAGTGGTGGG
CGATTTGCGC CCCAGGAGAG TGAGCTCGCA ACAGAAGTGA CTGGCCTGAT GGACGAAGAA
CCAGAGGGGC TTCCGCACGT GAACCCCTTG CGATCTGTCC TCTCCCCTGA AGAAGCAAAG
CCGACTGCGG TTCTTTTGAC CGAAGAAGAC TGTATGCCTG CGTCAGCGGA TCTTGCGTCA
CTGGATATTC GGGGGGCGGC ACGCCTATAT TGCAGTCACC TGCGCTCGCC ACGCAGGGTG
GCCGCCGCCG TGTCAACATT CGAGGAGGAT GCTCTGGCAG ATACCGTTGC GCGCATAGGT
CTGGATGCAC AGCCCTGGGC GGCGTCGGAG CCAGAGGCGC TGGCTGATTG GGTGCAGTCG
ATTGGGGCGC AGCAGATCTT CATGCCCTAT GCAACGGTCG GCCCGCTGGG AGACTGGATT
GCGCGGGCGC TGCCTTTGTT GCGGGCTCGG GGGGTCGCGG TAGCGGAATG GCAACGGGAT
TGGGACGGGC TGGTGTGGCC ACATGCAACG GCCGGGTTTT TCAAGGTCAA AAAGCGCTTG
CCTGACATCC TGACCAAGGC CGGGCTGACA TGA
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| Protein sequence | MATQEPQIGP ATRAEALLRM EAFTPRMGLN YATFRNHDYG PQRQSAVSML SPYLRRRLLT
EPEVIAAALA AHGPQEADKF VQEVLWRGYF KGWMERRPEV WANYITGRDA DFVALEEDPG
LAIRVNAAET GETGLAYFDT WAKELVRTGY LHNHARMWFA SLWIFTLKLP WRLGADFFLR
HLLDGDPASN TCSWRWVAGL HTRGKPYVAQ ASNIARFSGG RFAPQESELA TEVTGLMDEE
PEGLPHVNPL RSVLSPEEAK PTAVLLTEED CMPASADLAS LDIRGAARLY CSHLRSPRRV
AAAVSTFEED ALADTVARIG LDAQPWAASE PEALADWVQS IGAQQIFMPY ATVGPLGDWI
ARALPLLRAR GVAVAEWQRD WDGLVWPHAT AGFFKVKKRL PDILTKAGLT
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