| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3307 |
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| Symbol | |
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| ID | 4075711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 315194 |
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| End bp | 316543 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004815 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611541 |
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| Protein GI | 99078283 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0444358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.775669 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAG TATTGATGTC AGCCGCAGCG ATCACCGCGT TGATGGCAGG AACGGCGAGC
GCCCAGGATC TGATTTTTCC GGTCGGCGAA GGCGCCTTCA ACTGGGACAG CTACGCAGAG
CTGGAGAAGA TCGACCTGAA CGGTGAGCAG GTCACCGTGT TTGGTCCATG GCTCGGGCCT
GACCAAGAGG TTGTTGAAAA CGTACTGGCC TACTTCGCAG CCGCGACCGG TGCGGATGTG
CGCTATGCAG GCTCCGACAG CTTTGAGCAG CAGATCGTGG TCGATGCCGA GGCAGGCTCT
GCCCCCAATG TTGCTGTTTT CCCGCAGCCC GGTCTGGTGT CTGATATGGC CAAGCGAGGC
TTCATCACGC CGCTTGGTGA AGAAACCGCC GACTGGGTGC GCGACAACTA CGCCGCGGGT
CAGTCCTGGG TGGATCTCGG AACCTATCCG GGCGCAGATG GCAATGACGG GCTCTTTGGT
CTGTTCTACA AGGTCGATGT GAAGTCTCTG GTTTGGTATA ACCCGGAAAA CTTTGAGGAT
TTCGGATATG AAACTCCGCA GTCCATGGAA GAGCTGAAGG CGCTGACCGA GCAGATGGTG
GCCGATGGCA ACACTCCATG GTGCATCGGC CTGGGATCCG GTGGCGCGAC TGGCTGGCCT
GCGACCGACT GGGTCGAGGA CATGATGCTG CGCACGCAGG AACCCGCAGT CTACGACAAA
TGGGTCTCCA ATGAGCTGAA GTTCGATGAT CCTGCCGTCA TCGGTGCGAT TGAGGAATTC
GGTTGGTTCG CCAAGAACGA TGACTTCGTT TCTGGTGGTG CTGGTGCCGT GGCGTCTACC
GACTTCCGCG ATAGCCCCAA AGGTCTCTTT GCCAGCCCGC CGCAGTGCAT GATGCACCGT
CAGGCGTCCT TCATTCCGGC CTTCTTCCCA GAAGGCACCG AAATGGGTCT GGATGCTGAT
TTCTTCTACT TCCCTGCCTA CGAAGGCAAA GAACTTGGCA ATCCGGTACT GGGCGCGGGC
ACCATCTGGT CGATCACCAA TGACAGCCCC GGTGCTCAGG CGCTGATGGA GTTCCTGAAG
GCGCCGATCG CTCATGAAGT CTGGATGGCG CAGCAAGGGT TCCTGACCCC GCTGAAGAGC
GTCAACACCG ACCTCTATGC CACCGACACG CTGAAGAAGA TGGGCGAGAT TCTTCTCTCT
GCAGATACCT TCCGCTTTGA TGCATCCGAT CTGATGCCGG GTGGCGTGGG CGCCGGGTCG
TTCTGGACCG GCATGGTGGA TTACGCAGGT GGCAAACCTG CCGAAGAGGT TGCAACCGAG
ATCCAGTCCT CCTGGGATGC GCTCAAGTAA
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| Protein sequence | MKRVLMSAAA ITALMAGTAS AQDLIFPVGE GAFNWDSYAE LEKIDLNGEQ VTVFGPWLGP
DQEVVENVLA YFAAATGADV RYAGSDSFEQ QIVVDAEAGS APNVAVFPQP GLVSDMAKRG
FITPLGEETA DWVRDNYAAG QSWVDLGTYP GADGNDGLFG LFYKVDVKSL VWYNPENFED
FGYETPQSME ELKALTEQMV ADGNTPWCIG LGSGGATGWP ATDWVEDMML RTQEPAVYDK
WVSNELKFDD PAVIGAIEEF GWFAKNDDFV SGGAGAVAST DFRDSPKGLF ASPPQCMMHR
QASFIPAFFP EGTEMGLDAD FFYFPAYEGK ELGNPVLGAG TIWSITNDSP GAQALMEFLK
APIAHEVWMA QQGFLTPLKS VNTDLYATDT LKKMGEILLS ADTFRFDASD LMPGGVGAGS
FWTGMVDYAG GKPAEEVATE IQSSWDALK
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