| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2141 |
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| Symbol | |
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| ID | 4076455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2245649 |
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| End bp | 2247643 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007461 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_614135 |
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| Protein GI | 99081981 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.320176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.578732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCCA AAGATACTGA CGACCGCAAG CCTGACGATC AGGACGCCGA AATTTCGCTC
GATATGAGCC AGGCGCAAGT CAAGAAGATG ATCGCCGAAG CCCGCGAGAA GGGCTACATC
ACCTACGATC AGCTCAATCA GGTTTTGCCG CCGGATCAGG TCTCCTCCGA ACAGATCGAA
GACGTGATGT CTATGCTGTC GGAAATGGGC ATCAACATCA TCGAAGATGA AGAGGCCGAG
GAAGAAGAGA ACAAAGGCAC CACCGAACTG GTGACCACGG AATCCAACCG TGAAGTCGCA
GTGGCTGGCG CTGCGACTGA GAAGCTCGAC CGGACCGACG ATCCGGTCCG CATGTACCTG
CGCGAAATGG GCAGCGTCGA GCTGTTGTCG CGCGAGGGCG AGATCGCGAT TGCAAAGCGC
ATCGAGGCCG GGCGCAACAC CATGATCCTC GGGCTCTGCG AAAGCCCGCT GACATTTCAG
GCGATCACCA TCTGGCATGA CGAACTCCTC TCCGAGGATA TTCTTCTGCG CGATGTGATT
GATCTTGAGG CGACCTTTGG CAATCAGATG GACGAGGACG GTGACGTCGC CGAGCCGGTT
GTCGATCCCT CTGCAGTGTC TGGCGCTGCA AAGCCAGAAA AAGACTCCGG GCCCGAGCTT
GATGCCGATG GCAACCCGAT CCTCAACAAC GACGACGATG ACGACGACGA CGATGATCAG
GCCAACATGT CCCTTGCGGC CATGGAAGCG GCGCTCAAGG ATCGGGTTCT GGAAACGCTC
GAGCGGATTT CCAGTGACTT TGCGATGCTG TCGGAAATGC AGGATCTGCG GATCTCTGCG
ACGCTCAATG AGGATGGGTC CTTTTCGGCT GATGACGAAG CCAAGTACCA GCAGCTGCGC
TCTGAAATCG TGGAACTGGT GAACGGTCTT CACCTGCACA ACAACCGCAT CGAGGCGCTG
ATCGACCAGC TTTATGGTAT CAACCGCCGC GTCATGCAGA TCGATAGCGC CATGGTCAAA
CTCGCTGACC AGGCCCGTAT CAACCGCAAG GAATTCGTCG AAGCTTACCG TGGTCGCGAA
CTCGACCCCA ACTGGCTTTC CGAGATGAGC GAAAAGCCCG GTCGGGGCTG GCAGATGTTC
ATCGAGCGCT CGACCGAGAA GGTCGAAGAG CTGCGCGCCG ACATGGCACA GGTCGGTCAG
TACGTCGGTC TGGACATCTC GGAATTCCGC CGCATCGTGC AGCAGGTGCA AAAAGGTGAA
AAAGAGGCCC GTCAGGCCAA GAAGGAAATG GTCGAGGCCA ACCTGCGCCT CGTGATCTCA
ATCGCCAAGA AATACACCAA CCGGGGCCTG CAGTTCCTCG ACCTCATTCA GGAAGGCAAC
ATCGGCCTGA TGAAGGCGGT CGACAAGTTC GAATACCGTC GCGGCTATAA GTTCTCGACC
TATGCAACCT GGTGGATCCG TCAGGCGATC ACCCGCTCGA TCGCCGATCA AGCGCGCACC
ATCCGTATCC CGGTGCATAT GATCGAGACC ATCAACAAGC TGGTCCGCAC CGGCCGTCAG
ATGCTCCACG AAATCGGCCG CGAGCCGACG CCGGAAGAGC TGGCAGAAAA GCTGCAGATG
CCGCTCGAGA AGGTCCGCAA GGTGATGAAG ATCGCCAAGG AGCCCATTTC GCTCGAGACT
CCGATCGGGG ACGAGGAAGA CAGCCAGCTG GGCGATTTCA TCGAGGACAA GAATGCCGTG
CTGCCCCTGG ACAGCGCCAT TCAGGAAAAC CTCAAGGAAA CCACCACGCG GGTTCTGGCC
TCGCTCACCC CGCGCGAGGA GCGCGTGCTG CGGATGCGGT TTGGTATCGG CATGAACACC
GATCACACGC TCGAAGAGGT GGGCCAGCAG TTCAGCGTGA CCCGCGAACG GATCCGTCAG
ATCGAGGCCA AGGCGCTCAG GAAGCTCAAG CATCCGAGCC GCTCTCGCAA GCTGCGCAGC
TTCCTCGATC AGTAA
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| Protein sequence | MAAKDTDDRK PDDQDAEISL DMSQAQVKKM IAEAREKGYI TYDQLNQVLP PDQVSSEQIE
DVMSMLSEMG INIIEDEEAE EEENKGTTEL VTTESNREVA VAGAATEKLD RTDDPVRMYL
REMGSVELLS REGEIAIAKR IEAGRNTMIL GLCESPLTFQ AITIWHDELL SEDILLRDVI
DLEATFGNQM DEDGDVAEPV VDPSAVSGAA KPEKDSGPEL DADGNPILNN DDDDDDDDDQ
ANMSLAAMEA ALKDRVLETL ERISSDFAML SEMQDLRISA TLNEDGSFSA DDEAKYQQLR
SEIVELVNGL HLHNNRIEAL IDQLYGINRR VMQIDSAMVK LADQARINRK EFVEAYRGRE
LDPNWLSEMS EKPGRGWQMF IERSTEKVEE LRADMAQVGQ YVGLDISEFR RIVQQVQKGE
KEARQAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST
YATWWIRQAI TRSIADQART IRIPVHMIET INKLVRTGRQ MLHEIGREPT PEELAEKLQM
PLEKVRKVMK IAKEPISLET PIGDEEDSQL GDFIEDKNAV LPLDSAIQEN LKETTTRVLA
SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK HPSRSRKLRS
FLDQ
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