Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2134 |
Symbol | |
ID | 4076448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2239477 |
End bp | 2241516 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007454 |
Product | capsule polysaccharide biosynthesis |
Protein accession | YP_614128 |
Protein GI | 99081974 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3563] Capsule polysaccharide export protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAAG GGCCTTTGCC GCATCTGGAC GAGACCAGAA CCGGGAGCAA ACGCTCCCGG TTGTTTGTGT ATAACGGAGG GTTTCTGACC CAGTCCCGTG TCCGGCGCAT TCTTGATCTA GCGGGCTATG ACATTCGTCT GGGCCTGCCC AAAGAGGGCG ATCTGGTCGG GATCTGGGGC AACAGCCCCA CCGCCCATCG CGGCCGCAAG ATTGCCCAAG AGCATAACGC GCCCTTGGTG CGCATTGAGG ATGCGTTCCT GCGCTCGGTG CATCCGGGCC GCGATGGCGA GCCCCCGATG GGATTGCTGA TTGACCGCGC TGGCGTGCAT TTTGACCCGG CCCTTCCAAG CGACCTCATC ACGCTCCTGA AAGAACACCC ACTCGATGAC AGCGCCTTGA TGAAGCGCGC GCGCGACGCC ATGGCAAGGC TTCAGGACGC GCATCTGAGC AAATACAACG CCTTCCATCC CGATGTTCCC CCACCAGAAC CCGGCTACGT GCTGGTGGTG GATCAATTGC GCGACGATGC GTCCGTCAAG GCCTCGATCC CCTTCCCCGG CGCGGACCGG GGACGCTTTC AGGAAATGCT GGCCTTTGCG CGCGAAGAAA ACCCCGGCGC GCGCGTATTG ATCAAGACCC ATCCGGAAAC CACCAAGGGC CACCGTGCCG GCTATTTCGA CGCGCGTGAC ACCAATGATC AGGTGGAACT CTTTGATGCG CCAGTCTCGC CACATCTGCT GCTCGAGGGC GCTGTGGGCG TCTATACCGT GTCGTCGCAA CTCGGGTTCG AGGCCATCCT TTCCGGGCAC AGGCCGCGTA TCTTTGGCCA GCCTTTCTAT GCCGGATGGG GCCTGACGCA GGATGAGTTC CCCCCCGCGG GGCGTCATCG TCGCCTGACC CGCGCACAGC TTTTTGCGGC GGCCATGATC CTCTTTCCCA CCTGGTATGA TCCCCATCAC GACCGGCTTT GCGAGCTGGA GGACGTGATC GACTCTCTGG AGGCGCAGGT CCGGGCCTGG CGCGAAGACC GCGCTGGCTG GGCTGCCTCA GAGATGCGTC TGTGGAAGCG CGCGCCCTTG CAGCAGTTCT TCGGGCGCCA CAAGCGCATG AGTTTCACCG AAAAAACCGC AACTGCCAAA AAGAGCGGCA AGAACTGGAT GGTCTGGGCC AGCAAGGCGA CCAAGGATCA CGCCGGGGCG CATCATCTGG AAGATGGATT CTTGCGCTCG CGGGGGCTCG GGGCTGAACT GGTGCCGCCC TTGTCATTGG TGCTGGATCG TCAGGGCATT TATTATGACC CGACCCGTCA CAGTGATCTG GATGACCTGA TCCGCGAACG CGTCACGCTG AGCCCGCAGC AGGAACGCCG GATCGAGGCG CTGGTGATGC GGCTCATCAA ACATGAGGTG ACAAAATACA ATCTCGATGG CGCACTGCCC GATTTGCCCA AAGGGCATCG GGTTCTGGTG CCCGGCCAGG TCGAGGATGA TGCCTCCCTG CGGCTCGGAG CGGGTAAGAT CAACACCAAT ATGAAGCTGT TGCAGGCCGT GCGGGCTGCG CGCCCGAATG CGGTCGTGAT TTACAAACCG CACCCGGATG TGGAGGCAGG CCTGCGCAAG GGCCGCATCA GCCACGCCGA GGCCTGGGCG GATGTGGTGG CAGAGCATGC CAACCCGGCG GCGCTGATCG ACAGTGTCGA TGAGGTCTGG ACCATGACGT CGCTCCTGGG GTTTGAGGCT TTGTTGCGGC GGGTGCCGGT CACCTGTGTG GGGCTGCCGT TTTATGCTGG ATGGGGGCTG ACGCGGGATC GGCTTCAGGC GCCCCATTGG CGCGATGCGC GCCCTGGTAT CCTTGGGCTC GCCCATGCGG CGCTCATCGA CTATCCGCGC TATTTTGATC CGGTCTCAAA GCTGCCCTGC GCGCCCGAGG TTGCTGTCGA TCGGCTGATT GCCGGAGAGC TGCCTGCGCG CAGCCCCCTG AACAGCAGCC TCTCGAAATT GCAGGGGCTC TTTGCCTCAT TTGCTCCGCT CTGGCGCTGA
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Protein sequence | MMQGPLPHLD ETRTGSKRSR LFVYNGGFLT QSRVRRILDL AGYDIRLGLP KEGDLVGIWG NSPTAHRGRK IAQEHNAPLV RIEDAFLRSV HPGRDGEPPM GLLIDRAGVH FDPALPSDLI TLLKEHPLDD SALMKRARDA MARLQDAHLS KYNAFHPDVP PPEPGYVLVV DQLRDDASVK ASIPFPGADR GRFQEMLAFA REENPGARVL IKTHPETTKG HRAGYFDARD TNDQVELFDA PVSPHLLLEG AVGVYTVSSQ LGFEAILSGH RPRIFGQPFY AGWGLTQDEF PPAGRHRRLT RAQLFAAAMI LFPTWYDPHH DRLCELEDVI DSLEAQVRAW REDRAGWAAS EMRLWKRAPL QQFFGRHKRM SFTEKTATAK KSGKNWMVWA SKATKDHAGA HHLEDGFLRS RGLGAELVPP LSLVLDRQGI YYDPTRHSDL DDLIRERVTL SPQQERRIEA LVMRLIKHEV TKYNLDGALP DLPKGHRVLV PGQVEDDASL RLGAGKINTN MKLLQAVRAA RPNAVVIYKP HPDVEAGLRK GRISHAEAWA DVVAEHANPA ALIDSVDEVW TMTSLLGFEA LLRRVPVTCV GLPFYAGWGL TRDRLQAPHW RDARPGILGL AHAALIDYPR YFDPVSKLPC APEVAVDRLI AGELPARSPL NSSLSKLQGL FASFAPLWR
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