| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1943 |
|---|
| Symbol | |
|---|
| ID | 4076894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2047082 |
|---|
| End bp | 2047735 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007259 |
|---|
| Product | YhhN-like |
|---|
| Protein accession | YP_613938 |
|---|
| Protein GI | 99081784 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3714] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.132681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAACG AATCCGCCAT GATGCTTGAA ACCGTCACGC TGCTGCTGGC TGGCGGTTTT
GCGCTTGGCT ATCTGTGGCA GGTTCACGCA GACGAAAGCT GGTCGCGCTC TGGTTTCAAG
ACGGCGTCGG TTCTGAGCCT TGCTCTTGTG GCGGGCCTTT CGACGCCTCT GCTTGCGGTG
GCACTGGGGC TTTGTGCCTT TGGCGATCTG GCCTTGTCGC GACCGGGGGA ACGTGCCTTT
CTCGCGGGTG TTGGCAGTTT TGCAGGGGGT CATCTGGCCT ATGTGGGGCT GTTCCTCTCG
CTGCCTGATG CGGATGTAAC GCGGCTCTGG ACTGCGCCAG CGGGCTGGGC GGTGATTGCG
CTCGCGGGTG TTGCCTTGGC CATGATGTCG CTCTTGGCGC GTTTCGCGGG CGAGATGCGC
GTTCAGGTCA TGGCCTATGT GCCCGTGATT GTCGCCATGG GGCTGGCAGC ATTGACCCTG
CCCACGCCGC TCATTTGGTG CGCGGCGGTC ATGTTCATGA TCTCGGATAT GGTGCTCGCG
GTTGAGACCT TTGTTCTGCC TCCGGCGCAT CCTGCGCGCC GTCTGACAGC CCCCGTGATC
TGGCTTCTTT ACTGGGGCGC GCAGGCATTG TTTTTTGCAG TGCTTATCTT GTGA
|
|---|
| Protein sequence | MINESAMMLE TVTLLLAGGF ALGYLWQVHA DESWSRSGFK TASVLSLALV AGLSTPLLAV
ALGLCAFGDL ALSRPGERAF LAGVGSFAGG HLAYVGLFLS LPDADVTRLW TAPAGWAVIA
LAGVALAMMS LLARFAGEMR VQVMAYVPVI VAMGLAALTL PTPLIWCAAV MFMISDMVLA
VETFVLPPAH PARRLTAPVI WLLYWGAQAL FFAVLIL
|
|---|
| |