Gene Synpcc7942_1990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1990 
Symbol 
ID3774177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand- 
Start bp2060865 
End bp2061527 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content51% 
IMG OID637800435 
Producthypothetical protein 
Protein accessionYP_401007 
Protein GI81300799 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.302563 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACATCC CTTCCTTACT GGCGATCGAT CCTAATTTTC TCAAAGGCTT TACGAGTGGC 
CTCATTTTTA TCAGCATTGC TGAATTAGGG GATAAGACAT TTCTGATTGC AGCTCTGCTA 
GCGATGCGTC ACCGTCGCCG TTGGGTGCTG TTGGGAACGG TGCTGGCTTT GGCCTTGATG 
ACCATCTTAT CGGTGGCGAT CGGACAGTTG GCCAACCAAC TCTTGCCTGA GACTTGGGTG 
CGTTGGGCTG AAGTGGCCTT TTTTGCAATT TTTGGCCTGA AGCTTTGGCG AGATTCCTTG 
GGGATGCCCC AGGTCGGAGA CAGTGCAGAG GAGGAAGAAG CTGAAGAATT GGTGCTGGGG 
GCTGAAGCCA AGCTCGGGAA GCAGGTGACA GTTTTTACAG TCGTTTTAGA AGCTTTTAGC 
CTTGTTTTTG TGGCGGAATG GGGCGATCGC ACCCAATTCA CAACGATGGC GTTAGCAGCG 
GCTGGCAATG CTTGGGGTGT TGCCCTGGGT GCCATTTTGG GACACGCGAT TGTTGCTGTC 
ATCGCCGTTA ATGTCGGCCG TTGGGTCAGT CGTCATATTT CTGAGCGAGT CTTGACCCAA 
ATTAGTGCTG GGTTATTTTT ACTTTTTGCT GCGATTGCCT TGTGGGGCAT TGTGTCGAAA 
TAA
 
Protein sequence
MNIPSLLAID PNFLKGFTSG LIFISIAELG DKTFLIAALL AMRHRRRWVL LGTVLALALM 
TILSVAIGQL ANQLLPETWV RWAEVAFFAI FGLKLWRDSL GMPQVGDSAE EEEAEELVLG 
AEAKLGKQVT VFTVVLEAFS LVFVAEWGDR TQFTTMALAA AGNAWGVALG AILGHAIVAV 
IAVNVGRWVS RHISERVLTQ ISAGLFLLFA AIALWGIVSK