Gene Synpcc7942_1330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1330 
Symbol 
ID3775523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1362508 
End bp1363164 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content57% 
IMG OID637799761 
Producthypothetical protein 
Protein accessionYP_400347 
Protein GI81300139 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTTG TTGGACCTTG GCTGACTGCC GAACAGCGCA GCAAACTCGA TGGCAGTGAT 
GATGCCCTGT TCTACGAACA GCCGCGCTTT GTCACCCACG TGGATGACGC CTTCCTGAAG
CGCTTAACGC AGCTCTATCG CGAACGCCTG CAGCCCAACA GTCAGGTGCT GGATCTGATG
AGTAGTTGGG TCTCGCATCT GCCGGAGGAA ATGCTCTTCG CGACGGTGGT TGGCCACGGT
CTCAATGCCC AGGAACTCGA CCGCAATCCC CGCTGCGATC GCTGGTTTGT TCAGAACCTC
AATCAACAGT CCGCACTCCC CGAGCTGGAC AGTAGCTTTG ATGCTGTCTT GATCGCAGTC
TCAGTGCAGT ATCTGCAGCA GCCCGAACAG GTGTTGGCAG AGGTAAGACG TGTCCTCCGT
CCGGGCGGGC AGCTAATTAT CAGCTTCTCC AATCGCCTCT TCTACTCCAA AGCGATCGCG
GCTTGGCGCG ACGGCAGTGA TGCCCAGCGT TTGGCTTTGG TGCAGCACTA CATTCGCCAG
ACGGCTGGAT TTAGTGAACC GGAAGTGATT GCAGAAGTCT CACCCGCTCT GGGCTGGCAG
CAGTGGTTGG GGCTAGGACA AGATCCCTTC TACGCCGTAC TGGCAAGAGC AGTCTGA
 
Protein sequence
MAVVGPWLTA EQRSKLDGSD DALFYEQPRF VTHVDDAFLK RLTQLYRERL QPNSQVLDLM 
SSWVSHLPEE MLFATVVGHG LNAQELDRNP RCDRWFVQNL NQQSALPELD SSFDAVLIAV
SVQYLQQPEQ VLAEVRRVLR PGGQLIISFS NRLFYSKAIA AWRDGSDAQR LALVQHYIRQ
TAGFSEPEVI AEVSPALGWQ QWLGLGQDPF YAVLARAV