Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_1161 |
Symbol | |
ID | 3742811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | + |
Start bp | 1126914 |
End bp | 1129268 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637771341 |
Product | RNA binding S1 |
Protein accession | YP_377169 |
Protein GI | 78184734 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.140399 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTCA CGGTCGCCGA TCTACTCGAC CAGTTGTCCT CCAGTGATTC GGTTGAGACA GCTGTCGTTG CCAAAATACT GAAGCTGACG AATCAATCAG ATAAGAAATC TTTGGACATA GCGATTGATG CCCTCTCAAA AATGGGTGTT CTGACTCGCC GCGATGGAGA TGTTGTTGCA CTTTCTCGAA ACGATGAATT GATTGATGCC CGACTTCGAT GTAGCAGTAA GGGATTTTGT TTTGCGATTC GAGACGATGG CGGCGACGAT ATTTATATCC GAGATCATCA ACTCAACCAT GCCTGGAACG GCGATCGAGT TCTTGTAAGG ATTACGCGGG AAGGGGGTCG TCGTCGTTCT CCGGAAGGAG GTGTGCAGTG CATTTTGGAG CGTTCCACTA CTTCACTTCT TGGACAGGTT GAACGTCGAG ACGATCAATT GTTTGCTGTT CCACTCGACG ATCGGATGCT CACCACCATC CGACTGCCGG ATACAGCGAT GGAACATTTG TCGAGTGAAG AGCCCACTGC AGTCGTTGAG GTTCTTGTCG ATCGCTATCC AATTGCTCAA CATCCGGCCA TGGGGCAAGT GGTTCGTCCG CTTCCTCTGA ATGGTGGACC AGCCGCAGAT CGCGATCTTC TTTTAACCAA AGCAGGACTT CACCAACGTC CCTCGCCACC CCGTGGCTCT GGCAAGGCTC CTGCAGCGAA AGGTCGTGTC GACTTCACAG ATCAACCCGC TTTGTTGTTG AGAAGTTGGA CTGATTCGAG CGCACCTGGG CTTCCCGCTG TTCATGTGGA AGCGCGTGAT GGAGGTTGTC GGCTTTGGTT GCATGCTCCT GCTGTTGCAG AGCGCATCAT CGGGAGCAAT GCTCTGGACC TCTGGTTGAG AGAACGGATG GAAGCCCTTT GTCTCGGAGA AAATTGGCAA CCATTGCTCC AACCTTCGCT CAACGCCATA ACCAACTTCG TACCTGGTGA AGAAGCTGAA GCCGTAACCG TTCGCATGGA TATATCCCAA GAGGGTGAAC TAACTGATTG GGAATTCAGT CTTTCAACTA TCAAGCCGGC GGCTTTCATT GGGGTTGCAC AACTGAAAGC CCTTGATGAA CGCAAACCCA AGTCGCGAAG CATTCCGGCA GCGCTCAAAG GGATCAAAGA TCATTTAGGT CAACTTGAGA CACTGCGCTT TTGTGAAAGT TGCTTGAGGA AGAATGAGCA GGCTCAAGGT TTCGTTCAGT TGGACCTATG TCCACCGCAA TTAGAAAGCT TGGCTGATCT GCGTTGGGCA GATCCGATTA GCTTGCGCCA TCGCTGGATT GACGCACCAG TTTCTTCAGA TCCTCATTCT CTCCTTCAGC CCTTGATTCG CGCTGCAGAT CGTGCCTGGC AACTGCATCG TGAAGCACTG AAACTTCCAG GCATCACTAC ACACACAGGA GATCCAGATC CATCCCCCCT CACTGATGTA GCCAAAAGTG CAATTGCACT TGAATTGCCC TTGGAATTGG ATGAGGAAGG GAGCCCTTCT GCGCAGGAGT TAATCGGAGT GTTTAGTGAG TCACCGCATC GAAGGGTGCT CGAACAACAA CTCAGCCATG CCTTGCCAGC AATCAATTTT GTGGCTGTTG TACCAACGTT TGCACCCCTT GATGCAGAGC AAACTTTGCC TGAAGATTCC TTAGGGGATC CTGGTCATGC GCCTGTTGAA ATCCTCCAAA AAGTCTCTTC AACGCCATGG TGTTGCGCCA CGATGAGTTA TGCGCATCTG GTGAATCAAC AAATCTTGGT GTCATTGCTC CAAGACGGTA AAGATCGACC AACAGTGCGC CAAAAAGAGA GATTGATTCT TGGCCGTCAA GGTTGCGAAC AAGATCTCAG CTGGGCTTTA TTCACCGGAA GTCAAAACGA AAAACTCAAG TCTTTGGTTA GCGATCGTTT AGTCCAACGG CTGAATGGTC GCCGGCGGCA AGTCTTGGAG CTTGAAAAAG ATCTGTTATC CATGGTTCAG GCCCGCGCTG CTCAGCCTTT GGTGGGATTA ACGACTGATG GTCGAATCAG TGGAGTTCAA AGCTATGGAT TTTTTGTCGA AGTTGGTGAA AGTCGTGTGG AAGGTTTGGT GCACGTCAGC TCACTAAACG ATGATTGGTA TGAATATCGT TCACGACAAA ATCGTCTCGT TGGTCGGAAA AACAAACGCG TCTATCAACT TGGAGATACG GTTCAAGTCC GTGTAATCAA GGTGGATGTT TTACGCAACC AAATTGATCT TGAGGTGGAT CCTGTGTTCT TTGACAAACC AACGGATCAA GGAGAAATTC CTCAATCTGC ATCGATCCCA TTCGACAATC AATAA
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Protein sequence | MKFTVADLLD QLSSSDSVET AVVAKILKLT NQSDKKSLDI AIDALSKMGV LTRRDGDVVA LSRNDELIDA RLRCSSKGFC FAIRDDGGDD IYIRDHQLNH AWNGDRVLVR ITREGGRRRS PEGGVQCILE RSTTSLLGQV ERRDDQLFAV PLDDRMLTTI RLPDTAMEHL SSEEPTAVVE VLVDRYPIAQ HPAMGQVVRP LPLNGGPAAD RDLLLTKAGL HQRPSPPRGS GKAPAAKGRV DFTDQPALLL RSWTDSSAPG LPAVHVEARD GGCRLWLHAP AVAERIIGSN ALDLWLRERM EALCLGENWQ PLLQPSLNAI TNFVPGEEAE AVTVRMDISQ EGELTDWEFS LSTIKPAAFI GVAQLKALDE RKPKSRSIPA ALKGIKDHLG QLETLRFCES CLRKNEQAQG FVQLDLCPPQ LESLADLRWA DPISLRHRWI DAPVSSDPHS LLQPLIRAAD RAWQLHREAL KLPGITTHTG DPDPSPLTDV AKSAIALELP LELDEEGSPS AQELIGVFSE SPHRRVLEQQ LSHALPAINF VAVVPTFAPL DAEQTLPEDS LGDPGHAPVE ILQKVSSTPW CCATMSYAHL VNQQILVSLL QDGKDRPTVR QKERLILGRQ GCEQDLSWAL FTGSQNEKLK SLVSDRLVQR LNGRRRQVLE LEKDLLSMVQ ARAAQPLVGL TTDGRISGVQ SYGFFVEVGE SRVEGLVHVS SLNDDWYEYR SRQNRLVGRK NKRVYQLGDT VQVRVIKVDV LRNQIDLEVD PVFFDKPTDQ GEIPQSASIP FDNQ
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