| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1125 |
|---|
| Symbol | |
|---|
| ID | 4282962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 1301451 |
|---|
| End bp | 1302839 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638137998 |
|---|
| Product | drug resistance transporter, EmrB/QacA family protein |
|---|
| Protein accession | YP_753806 |
|---|
| Protein GI | 114566652 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTAG AAGAAAAATG GCGTGTGCTA ATAATTATTT GCATCGGCAT ATTTATGTCC
ACGGTCGATG GTAGTATTTT AAATATCGCC AATCCCACTA TTGCCCGGGA ACTTTCGGTC
AGCATGCGGG AGATTCAATG GGTGGTAACA GCTTATATGC TTGTAATCAC CACTTCCCTG
CTTTTCTTTG GCAAGCTGGG AGATATGCTG GGTAGTAGCA AAATATACTC TTACGGTTTC
CTTATTTTCA CCATAGGTTC CTTATTATGC AGCCTCTCCC CTTCCCTGGC TTATTTAGTA
GCCGCTCGGG TTATACAGGC CATAGGGGCC AGTATGATGA TGGCAACTGG AATCGGGATA
GTCTCCAATA CCTTTCCCCC CGGAGAGAGG GGTAAAGCCC TGGGCATTAC CGGCAGTATA
GTCGGTGTAG GGAATATGAC CGGCCCCAGT TTAGGGGGAA TTCTAATAGG CAACTTTAGT
TGGCCGGTGA TATTTCTTAT CAATGTCCCC ATCGGAATCC TGGCCTTTTA CCTGGGCATG
AGGTATTTGC CCCAGCAAGC AAAAAGCCTT GCCCAGAAGA AGCACGACCT GGGGGGATTG
CTGCTATTTG CCCTATCAAC TATCTTGCTG CTGCTTTCCT TCTCCGGAAG CCATGGTATT
GAATGGAAAC TATTCAGCCT GGGGCTTTTA ATTATGCTCT TGTTCTACCT TTTTGAAAAA
AGAATATCTG AAGCCGTATT GGATTTAGAA CTGTTTAAGA TAAAGAACTT TACTCATGGC
AACCTTATGG CCTTCGCCGC TTACAGTGCC CAGACCTCGG TTTTTTTCCT TATGCCGTTT
TTTCTGGAAA ACCTCTTGCA TTACCCCCCG GCCTTTTCCG GTTTGATTAT GACCATACCA
CCGGTTACCA TGGCCATAAC CGCTCCCCTC GCCGGGGCTC TTTCCGACCG CATCGGCAAT
AGAAGGATTA CCCCCCTGTC TTTTCTCTTT ATGACCTCTG CCTACCTACT ATTATCTACT
TTGGAGCAAG AGAGTGGCCT GTTAAAAATT GCCGGAAGTC TGCTGTTGAT GGGAGTTGGT
ATGGGGTCCT TTGGTTCCCC CAACAGCAGC TCCATCCTGG GGTCCATTCC GCGTGAAAAA
GCTGGCTATG CTGGCGGATT CATGGCTACA GTCAGAAACT TTTCCTTCTC CCTGGGTGTT
GCCGCCTCAG TAAGCACTTT TGCTTACTTC CTCAGCCTTT ACCAGCAAAA AAACAGCTAT
ATTGCCGCCT ATGCCGGAGC CGCCCATGCT GTTTACAGAA TAGCTGCGAT AATAAGTATC
CTGGCTTTTT TGCTTTCCCT GCTGGAACGC GAGCCAGCAA GAAGCACGGA ATCTGAATCC
CTGAATTAG
|
|---|
| Protein sequence | MKLEEKWRVL IIICIGIFMS TVDGSILNIA NPTIARELSV SMREIQWVVT AYMLVITTSL
LFFGKLGDML GSSKIYSYGF LIFTIGSLLC SLSPSLAYLV AARVIQAIGA SMMMATGIGI
VSNTFPPGER GKALGITGSI VGVGNMTGPS LGGILIGNFS WPVIFLINVP IGILAFYLGM
RYLPQQAKSL AQKKHDLGGL LLFALSTILL LLSFSGSHGI EWKLFSLGLL IMLLFYLFEK
RISEAVLDLE LFKIKNFTHG NLMAFAAYSA QTSVFFLMPF FLENLLHYPP AFSGLIMTIP
PVTMAITAPL AGALSDRIGN RRITPLSFLF MTSAYLLLST LEQESGLLKI AGSLLLMGVG
MGSFGSPNSS SILGSIPREK AGYAGGFMAT VRNFSFSLGV AASVSTFAYF LSLYQQKNSY
IAAYAGAAHA VYRIAAIISI LAFLLSLLER EPARSTESES LN
|
|---|
| |